Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7364 93.3 4e-14 seq267 93.3 4e-14 seq1190 91.5 1e-13 >seq7364 Length=1738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || || ||||| ||| || ||| | || Sbjct 117 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 176 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG-ATCA 29080 || ||| | ||| | ||||| ||| || ||| || || || || | | | | |||| Sbjct 177 GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGG-GTTCTCATCGGATCA 235 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| || || ||| | ||| ||| ||||||| Sbjct 236 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACAG 295 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||||||||| |||| | ||| | || || || Sbjct 296 CATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 343 >seq267 Length=345500 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || || ||||| ||| || ||| | || Sbjct 56588 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 56529 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG-ATCA 29080 || ||| | ||| | ||||| ||| || ||| || || || || | | | | |||| Sbjct 56528 GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGG-GTTCTCATCGGATCA 56470 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| || || ||| | ||| ||| ||||||| Sbjct 56469 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACAG 56410 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| ||||||||| |||| | ||| | || || || Sbjct 56409 CATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 56362 >seq1190 Length=94153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| || || ||| ||| ||| | | Sbjct 39792 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTCGAGGTGGAGAGCTCT 39851 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || || ||| | ||| || || Sbjct 39852 GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 39911 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || |||||||| ||||| || || || ||| | || |||| |||||||| Sbjct 39912 CAAAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAAC 39971 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||||| |||||| | ||| Sbjct 39972 ATTCAGAAGGAGTCTACCCTTCACCTTGTG 40001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| || || ||||| ||| ||| ||| | | Sbjct 59792 ATGCAAATCTTCGTCAAGACTTTGACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 59733 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || || || | ||| || || Sbjct 59732 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 59673 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| ||||| || || || ||| | || |||| |||||||| Sbjct 59672 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAAC 59613 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||||| |||||| | ||| Sbjct 59612 ATTCAGAAGGAGTCTACCCTTCACCTTGTG 59583 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| || || ||| ||| ||| | | Sbjct 59481 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTCGAGGTGGAGAGCTCT 59422 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || || ||| | || || || Sbjct 59421 GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCGCCGGACCAG 59362 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || |||||||| ||||| || || || ||| | || |||| |||||||| Sbjct 59361 CAAAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAAC 59302 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || || |||||| | ||| Sbjct 59301 ATTCAGAAGGAGTCCACCCTTCACCTTGTG 59272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428187663896825