Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1530 149 9e-31 >seq1530 Length=69702 Score = 149 bits (164), Expect = 9e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||||||| || || ||||| ||||| || | ||| | ||| | | Sbjct 25407 ATGCAAATTTTCATAAAGACTCTCACCGGCAAGACTATCACCCTTGAGGTCGAATCTTCT 25348 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| |||| ||||||||||| ||||| || || || || || || Sbjct 25347 GACACCATTGATAATGTAAAGGCCAAAATTCAAGACAAAGAGGGCATTCCCCCAGACCAG 25288 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| || ||||||||||||||| |||| || ||| ||| || ||| Sbjct 25287 CAAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAAT 25228 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 ||||| || ||||| || | ||||||||| Sbjct 25227 ATTCAGAAGGAATCTACCCTTCATTTGGTT 25198 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || || || || || | ||| | ||| | Sbjct 26320 AATGCAAATTTTCGTTAAAACTCTCACCGGTAAGACCATCACCCTTGAGGTCGAATCTTC 26261 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| |||| || |||||||| ||||| || || || || || || Sbjct 26260 TGACACCATTGATAATGTAAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCA 26201 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || ||||||||||||||| |||| || ||| ||| || || Sbjct 26200 GCAAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAA 26141 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||| || ||||| || | |||||||| Sbjct 26140 TATTCAGAAGGAATCTACCCTTCATTTGGT 26111 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 25180 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTC 25121 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | ||| ||||||||||| ||||| ||||| || | ||||| Sbjct 25120 CGATACTATTGATAATGTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGATCA 25061 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || ||||||||||||||| |||| || ||| || || || Sbjct 25060 GCAAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTACAA 25001 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 25000 CATCCAGAAGGAGTCCAC 24983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755187671472000