Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1530 98.7 1e-15 >seq1530 Length=69702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || || || || | |||||||| | |||||||| || ||||| || |||| Sbjct 25179 TTCCTCCCCTGAGCCTGAGAACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTG 25238 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || || | | ||| ||||||||||| |||||||| ||||| |||||||| || || | Sbjct 25239 CTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGG 25298 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| ||||| Sbjct 25299 GAATGCCCTCTTTGTCTTG 25317 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||| || ||||| || |||| || || | | ||| ||| Sbjct 26111 ACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCTAGGGTGCGACCATCCTCT 26170 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 |||||||| |||||||| ||||| |||||||| || || ||||| || ||||| ||||| Sbjct 26171 AATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCTTGA 26230 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 || || ||| ||| || || || ||||| || ||| Sbjct 26231 ATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATGGTCTTA 26290 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || | ||||||| ||| ||||||||| Sbjct 26291 CCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743262308716800