Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq262 91.5 3e-13 seq202 91.5 3e-13 >seq262 Length=346991 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| |||| || ||||| || |||| ||||||||| | ||| | Sbjct 237100 AGACTTTGACTATGATTATTTTGGATTTAAAACTCTTGAGAGGTCGTATCTCTTAAAAGT 237041 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||||| | ||||| | || |||||||||||| |||| ||||| || || || Sbjct 237040 TTGTGGCAAGGTAGTGGAGAGGCCACAACACATGTTGATGAGAGTAGCTGTTGGAATCCA 236981 Query 248928 CAAGGATGACATAGA 248942 ||| |||||||| || Sbjct 236980 CAAAGATGACATTGA 236966 >seq202 Length=395113 Score = 91.5 bits (100), Expect = 3e-13 Identities = 297/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || || ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 243758 GTACTCACCGACCCTTTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTCCAT 243817 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | ||||| |||| |||| |||||| ||| | Sbjct 243818 CCAGTCGAAAGGGTTGGAGACCCCGTACATCTTGCCGTAGCCCAGCGCCCCGAGCAGGCG 243877 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || | ||||| |||||||| |||| | | || |||| ||||||||| Sbjct 243878 GTCGGCGATAAACTCGATGTACTGGCTCATCAGGACACCATTCATCCCGACGAGCGCGAC 243937 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| || | || || | | ||| || | ||| | | ||| |||| | || | Sbjct 243938 GGGCAG-GGCGTCGCAGACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGATAGCCC 243996 Query 157497 GAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGC--CGT 157554 | || | ||| | ||| | || ||| | ||| | ||| | |||| || Sbjct 243997 GGACCTTGTCCTCGGAGAGCTTGTTGCGGAGGAGGCCGTAAAGGAG---GCAAGCAAAGT 244053 Query 157555 GGC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGA 157610 || |||||| || ||||| | || |||||| ||| | ||| | | ||| | ||| Sbjct 244054 CGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGA 244113 Query 157611 ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCT 157670 | | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 244114 --GGCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCT 244170 Query 157671 CCAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | | |||| |||| |||| || | ||| |||| Sbjct 244171 CGACGCAGGCGAAGGCGACGAGTCGCTCGGCGA 244203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073375476886720