Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq299 98.7 8e-16 seq1530 91.5 1e-13 seq267 91.5 1e-13 seq1190 89.7 4e-13 >seq299 Length=319228 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || || || |||| ||| || || ||||| || || || || ||||| ||| Sbjct 261945 CCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGCC 261886 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||||||| ||||| ||| |||| || ||||| || || ||| Sbjct 261885 AAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGGGGA 261826 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | |||||| | | | ||||| | ||| Sbjct 261825 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCCGAGCTCTCAACC 261766 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || ||||| | ||||| |||||||||||||| Sbjct 261765 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAAATTTGCAT 261719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || || ||||||||||||| || | ||| Sbjct 261018 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCC 260959 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| || |||| || ||||| |||||| ||| | ||||||||| || Sbjct 260958 TCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCC 260899 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| |||||| || || |||| ||||||| | Sbjct 260898 TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTC 260839 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| ||||| |||||||| Sbjct 260838 TTTCCGGTGAGAGTTTTGACAAAGATTTGCAT 260807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || || ||||||||||||| || | ||| Sbjct 261246 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCC 261187 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| || |||| || ||||| |||||| ||| | ||||||||| || Sbjct 261186 TCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCC 261127 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| || || |||| ||||||| | Sbjct 261126 TGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCAAGGGTGATGGTC 261067 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| |||||||| ||||| Sbjct 261066 TTTCCGGTGAGAGTTTTGACAAAAATCTGCAT 261035 >seq1530 Length=69702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| ||||| || ||||| || ||||| |||||||| || Sbjct 25180 TCCTCCCCTGAGCCTGAGAACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGC 25239 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || |||||||| || ||| | || | ||||| || || ||| Sbjct 25240 TAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGG 25299 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||||| ||| || | ||| |||||| | ||| Sbjct 25300 AATGCCCTCTTTGTCTTGAATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGAC 25359 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | |||||||| | || |||| ||||||||||| Sbjct 25360 CTCAAGGGTGATAGTCTTGCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| | || || |||| ||||| || ||||| || ||||| |||||||| || Sbjct 26092 TCCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGC 26151 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || |||||||| || ||| | || | ||||| || || ||| Sbjct 26152 TAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGG 26211 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||| | ||| || | ||| |||||| | ||| Sbjct 26212 AATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGAC 26271 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | || ||||| | ||||| || |||||||||||| Sbjct 26272 CTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| || | || || ||| Sbjct 24968 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGACCATCC 25027 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || ||| |||| | ||||| ||||| | ||| | || || || || Sbjct 25028 TCTAATTGTTTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTGTCT 25087 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | ||| ||| || | || |||| ||||||| | Sbjct 25088 TGAATTT-TAGCTTTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATGGT 25146 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||||||| | || || || |||||||||||| Sbjct 25147 CTTGCCGGTGAGAGTCTTAACGAAAATTTGCATT 25180 >seq267 Length=345500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||||| ||||| ||||||| ||||| || ||||| || || ||| ||| ||||| Sbjct 56592 TCCCCCCCGGAGTCTCAGTACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGC 56651 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| ||||| ||| |||| || ||||| || ||||| || Sbjct 56652 TAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGG 56711 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | ||| || | | | ||||| | |||| Sbjct 56712 GATACCCTCCTTGTCTTGCATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGAC 56771 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||| || |||||||||| | || || | || |||||||| Sbjct 56772 CTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTGCAT 56819 >seq1190 Length=94153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || || || || | |||||| || || || || ||||||||||| || ||| Sbjct 40018 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCCGCC 39959 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || ||||| ||| |||| || ||||| || ||| ||| Sbjct 39958 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGA 39899 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||| | |||||| | ||| |||||| | ||| Sbjct 39898 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACC 39839 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| ||||| || || ||||| |||||||| Sbjct 39838 TCGAGGGTGATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 39792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || || || || | |||||| || || || || ||||||||||| || ||| Sbjct 59255 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCC 59314 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || ||||| ||| |||| || ||||| || ||| || Sbjct 59315 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGCGGA 59374 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||| | |||||| | ||| |||||| | ||| Sbjct 59375 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACC 59434 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| ||||| || || ||||| |||||||| Sbjct 59435 TCGAGGGTGATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 59481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379212630209175