Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq125 93.3 5e-14 >seq125 Length=520858 Score = 93.3 bits (102), Expect = 5e-14 Identities = 243/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||| || || |||||||| | || | ||||| || || ||||| Sbjct 302538 CAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 302597 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| ||||| || |||||||| || | ||| || || || |||||| Sbjct 302598 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 302657 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGT 33758 ||||| || || || ||||| | || || ||| || ||| | || | | | Sbjct 302658 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTCA 302714 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| |||||||| ||| | || | ||| || |||||| Sbjct 302715 ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGAGACAGAGGGGACCGTGTCGATGGCACGG 302774 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||||| | | || || | | || || | || || || | | || ||||| Sbjct 302775 AAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACATC 302834 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | | Sbjct 302835 TCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGC 302894 Query 33939 TGCACTTC 33946 || || || Sbjct 302895 TGGACGTC 302902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629593896661200