Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1710 98.7 1e-15 seq403 98.7 1e-15 seq1530 93.3 4e-14 seq388 93.3 4e-14 seq299 91.5 1e-13 seq7364 86.0 6e-12 seq267 86.0 6e-12 seq193 82.4 8e-11 >seq1710 Length=60682 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| || ||| || |||| |||||||||||| |||||| Sbjct 22680 GTGGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 22621 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| ||||| || || || || ||||| ||| || || Sbjct 22620 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 22561 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || |||||||| | ||| | |||||||| || | ||| Sbjct 22560 ACATTGTCGATGGTGTCGGAGGATTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 22501 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 22500 TTCACGAAGATCTGCAT 22484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| || ||| || |||| |||||||||||| |||||| Sbjct 22908 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCGTCTTCGAGCTGCTTACCA 22849 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| ||||| || ||||| |||||| || Sbjct 22848 GCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTA 22789 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | ||| | ||||||||||| | || Sbjct 22788 ACGTTGTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 22729 Query 139748 TTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 22728 TTCACAAAGATCTGCATA 22711 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| ||| || |||| || |||||||| Sbjct 23142 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 23083 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||||| | ||||| || ||||| ||||| || ||||| |||||| Sbjct 23082 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTG 23023 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | | ||| ||||| | ||| | ||||||||||| Sbjct 23022 GCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 22963 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 22962 AGAGTCTTCACAAAGATCTGCATA 22939 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| ||| || |||| || |||||||| Sbjct 24875 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 24934 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||||| | ||||| || ||||| ||||| || ||||| |||||| Sbjct 24935 TTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTG 24994 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | | ||| ||||| | ||| | ||||||||||| Sbjct 24995 GCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 25054 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 25055 AGAGTCTTCACAAAGATCTGCATA 25078 >seq403 Length=254866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | |||||||| || || |||||||| ||| Sbjct 86298 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCGGC 86239 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || |||| || || ||||| || || || Sbjct 86238 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 86179 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 86178 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCCAC 86119 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | |||||| || |||||||| || ||||| || |||||| Sbjct 86118 CTCAAGGGTGATCGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATA 86070 >seq1530 Length=69702 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTT 139613 ||| || |||| || || || |||||||||||||| || ||| | |||| ||| | Sbjct 25426 AACCAAATGAAGGGTCGATTCCTTTTGAATGTTATAGTCTGCT-AGGGTGCGACCGTCCT 25484 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | ||||| || |||||| |||||| | ||||| || || || |||||||| ||||| Sbjct 25485 CTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC-T 25543 Query 139674 TGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| | || | |||| | || | |||||| | | || ||||||| ||| | ||| Sbjct 25544 TGAATCTTGGCCTTTACATTATCAATTGTGTCAGAAGATTCAACCTCAAGGGTGATGGTC 25603 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| | || || | ||| |||||||| Sbjct 25604 TTACCGGTGAGGGTCTTGATGAAAATTTGCAT 25635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTT 139613 ||| || |||| ||||| || || ||||| || || || ||| | |||| || | Sbjct 25198 AACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT-AGGGTGCGACCATCCT 25256 Query 139614 CGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 139673 | | ||||| |||||| | |||| | |||||| || || || ||||| |||||||| Sbjct 25257 CTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCT- 25315 Query 139674 TGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| |||| | |||| | || | ||||| | | || ||||||| ||| | ||| Sbjct 25316 TGAATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATAGTC 25375 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| | || |||| ||| |||||||| Sbjct 25376 TTGCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 >seq388 Length=261907 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| |||||||| || | |||| ||| ||||||||||| || Sbjct 215065 GTGGACTCCTTTTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGTTTGCCG 215006 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | |||||| || || || ||||| || ||||| ||| | || | ||| Sbjct 215005 GCAAAGATAAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTGGCTTT 214947 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||||| ||| | ||||| || |||| ||| Sbjct 214946 GACGTTGTCGATGGTGTCCGAGCTCTCGACCTCAAGGGTAATGGTCTTCCCCGTCAGCGT 214887 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 214886 CTTCACGAAGATCTGCAT 214869 >seq299 Length=319228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || || || || ||| Sbjct 261034 GCCACCACGGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGC 260975 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || ||||||||||| ||||| |||| || | ||||||||| || || Sbjct 260974 CAAGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGATCCGGGGG 260915 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | || || || Sbjct 260914 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGATTCAAC 260855 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 260854 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAGATTTGCAT 260807 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || || || || ||| Sbjct 261262 GCCACCACGGAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGC 261203 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || ||||||||||| ||||| |||| || | ||||||||| || || Sbjct 261202 CAAGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGATCCGGGGG 261143 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | || || || Sbjct 261142 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCAGAGGATTCAAC 261083 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| | ||||| || || || ||||| Sbjct 261082 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTGACAAAAATCTGCAT 261035 >seq7364 Length=1738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | ||| | ||||| || || || || |||||| | ||||| Sbjct 346 TGGCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCT 287 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || ||||||||||| || ||| |||| || | |||||||| | Sbjct 286 TCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGAT 227 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | | || || |||||| ||| ||| ||| || | | | ||||| | | |||| Sbjct 226 GAGAACCCCTCCTTGTCGTGGATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCC 167 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 166 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 117 >seq267 Length=345500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | ||| | ||||| || || || || |||||| | ||||| Sbjct 56359 TGGCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCT 56418 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || ||||||||||| || ||| |||| || | |||||||| | Sbjct 56419 TCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGAT 56478 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | | || || |||||| ||| ||| ||| || | | | ||||| | | |||| Sbjct 56479 GAGAACCCCTCCTTGTCGTGGATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCC 56538 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 56539 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 56588 >seq193 Length=408959 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| |||||| | |||| ||||||||||||||| || Sbjct 265084 CGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCGAGCTGTTTGCC 265025 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || | |||||| || || || ||||| || ||||| ||| || || Sbjct 265024 TGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 264965 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | ||| | ||||| || || | || Sbjct 264964 GACGTTGTCGATGGTGTCCGAGCTCTCGACCTCCAAGGTAATAGTCTTCCCAGTGAGAGT 264905 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 264904 CTTCACGAAGATCTGCAT 264887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495887804268000