Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq125 114 2e-20 seq83 104 3e-17 seq1475 87.8 3e-12 >seq125 Length=520858 Score = 114 bits (126), Expect = 2e-20 Identities = 250/369 (68%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||| || || |||||||| | || || ||||| || || ||||| Sbjct 302538 CAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 302597 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || |||||||| || | |||| || || ||||| ||||| Sbjct 302598 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 302656 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA---TG 50135 |||||| || || ||| ||||| |||| || ||| || ||| | || | | | Sbjct 302657 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTC 302713 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| |||||||| ||| | || | ||| || |||||| Sbjct 302714 AATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGAGACAGAGGGGACCGTGTCGATGGCACG 302773 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 |||||| | | || || | | || || | || || || | | || ||||| Sbjct 302774 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACAT 302833 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | Sbjct 302834 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAG 302893 Query 50316 CTGCACTTC 50324 ||| || || Sbjct 302894 CTGGACGTC 302902 >seq83 Length=609517 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || ||||||||||| || ||||| Sbjct 416677 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 416618 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| || || || ||||| || || | |||| || || || || ||||| Sbjct 416617 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAGCCGGAGAAGAA 416559 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| |||||||| || | ||| Sbjct 416558 GATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 416523 >seq1475 Length=72375 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || || |||||| ||| | | ||| ||| ||| | ||| || | ||| ||| Sbjct 29783 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 29724 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || | ||||| | || |||| || |||||||||||||||||||||||| || ||| Sbjct 29723 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 29664 Query 79981 AGATCTCTGGTTCTATGCTCCTC 80003 || || || | ||||||||| || Sbjct 29663 AGGTCCCTAGCTCTATGCTCTTC 29641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718013679900600