Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq125 102 1e-16 seq1475 87.8 2e-12 >seq125 Length=520858 Score = 102 bits (112), Expect = 1e-16 Identities = 230/342 (67%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||| || || ||||| || | || | ||||| || || ||||| Sbjct 302538 CAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 302597 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || |||||||| |||| |||| || || ||||| ||||| Sbjct 302598 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 302656 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATG 42240 |||||| || || || ||||| | || || ||| || | |||| | ||| Sbjct 302657 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCA-- 302714 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| |||||||| ||| | || | ||| || |||||| Sbjct 302715 -ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGAGACAGAGGGGACCGTGTCGATGGCACG 302773 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||| | | || || | | || || | || || || | | || ||||| Sbjct 302774 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACAT 302833 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || || ||||| || ||||| ||||| || |||||||| Sbjct 302834 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 302875 >seq1475 Length=72375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || || || || |||||| || | | ||| ||| |||||| || || | ||||||| Sbjct 29783 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 29724 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | ||||| | | |||| || |||||||||||||||||||||||| || ||| Sbjct 29723 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 29664 Query 72064 AGATCTCTGGTTCTATGCTCCTC 72086 || || || | ||||||||| || Sbjct 29663 AGGTCCCTAGCTCTATGCTCTTC 29641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670900819745400