Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1530 95.1 1e-14 seq1710 87.8 2e-12 >seq1530 Length=69702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTT 143033 ||| ||||||| |||||||| || || || ||||| || ||| | |||| || | Sbjct 25198 AACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT-AGGGTGCGACCATCCT 25256 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | | |||||| |||||| | |||| | |||||| || || || ||||| |||||||| Sbjct 25257 CTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCTT 25316 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 |||||| |||| | || | ||||| | | ||| || |||| || | |||| Sbjct 25317 GAATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATAGTCT 25376 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| | || |||| ||| |||||||| Sbjct 25377 TGCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 >seq1710 Length=60682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||| || |||| ||||||||| || |||||| Sbjct 22908 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCGTCTTCGAGCTGCTTACCA 22849 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | ||||| || ||||| ||||| || ||||| ||||| || Sbjct 22848 GCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTA 22789 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | ||| || || | || | ||||||||||| | || Sbjct 22788 ACGTTGTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 22729 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 22728 TTCACAAAGATCTGCATA 22711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506834314822800