Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1439 172 8e-38 seq125 167 3e-36 seq83 147 3e-30 seq202 140 5e-28 >seq1439 Length=74689 Score = 172 bits (190), Expect = 8e-38 Identities = 395/582 (68%), Gaps = 11/582 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||||||||||| || | || ||||| | ||||||||||| ||||||||| | Sbjct 63070 TGTTTCCCATCACCTACCCCTCAATCTGGGAGTTCTACAAAAAGGCCGTGGCCTCCTTCT 63011 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| || ||||| |||| || | | | ||| | |||| || ||| Sbjct 63010 GGACGGCGGAGGAGGTGGACTTGTCCCAGGATCTCTCCCACTGGCATGATCGTCTGTCTG 62951 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 |||| | || || || || | | ||||| ||||||| |||||| || |||| Sbjct 62950 CCGACGAGCACCACTTCATTTCCCATGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCG 62891 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || ||| ||| || ||| | || || | | |||| |||| || || Sbjct 62890 TCCTCGAGAACCTGGCGACCCGGTTCATGCGCGACGTCCAGC-TTCCTGAGGCC-CGCGC 62833 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| || |||||| | ||||| || ||||| ||| || | Sbjct 62832 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTATTCTCTCCTCCT 62773 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGG 125352 |||| ||||| || || | || || | || |||| | || || ||||| | Sbjct 62772 CGACACCTACATCAAGGACCC-CGGCGAGAAGTCCCGCCTCTTCCATGCCATTGACACCG 62714 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | || || | ||||| | |||| | | || ||||||| || | || Sbjct 62713 TCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACGCTGGATCG--GATCCTCTGACT- 62657 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGT 125471 | | |||||| | || || || |||||| ||| |||||||||||||| || || | | Sbjct 62656 CATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCT 62597 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | |||| ||||||| |||||||||||||| || |||||||| || || || ||| Sbjct 62596 TCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAAC 62538 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 62537 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCC 62496 >seq125 Length=520858 Score = 167 bits (184), Expect = 3e-36 Identities = 394/584 (67%), Gaps = 17/584 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| ||||||| || | | ||| ||||| | ||||| ||||| ||||||||||| Sbjct 303114 TGTTCCCCATCACTTACCCTTCCATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTTT 303055 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| |||||||| |||| | | ||||| || ||| | | Sbjct 303054 GGACGGCGGAGGAGGTGGATCTGTCGCCGGACGTCCCCCATTGGCAGCATCGCCTCTCCC 302995 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || || ||| || | || ||||| |||| ||| || || |||| Sbjct 302994 ACGACGAGCGCCACTTCATCTCCCACGTTCTTGCTTTCTTCGCCGCCTCAGACGGCATCG 302935 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || || ||||| | || ||| | || || | | | || |||| ||| || Sbjct 302934 TCCTTGAGAATCTCGCCGCCCGGTTCATGCGCGACGTCCAGC-TCCCCGAGGC-TCGCGC 302877 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| || |||||| | ||||| || |||||||| || | Sbjct 302876 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTACTCCCTCCTCCT 302817 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGG 125352 |||| ||||| || || | || || || | ||||| || |||||||||| Sbjct 302816 GGACACCTACATCAAGGACCCTGA-CGAGAAGACCCGTCTCTTCCGTGCCATCGACACGG 302758 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA---TGACGACAAGT 125409 | || ||| | |||||| | |||| | || ||||| || | || | Sbjct 302757 TCCCCTCTGTCTCCCGAAAGGCCGACTGGGCCCTGCGCTGGATTGAATCTTCCGGC---- 302702 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 |||| ||||| || | || || |||||| || ||||| |||||||| || || | Sbjct 302701 --TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCT 302644 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || |||| | ||||||||||||||||||||||| |||||||| || || || | Sbjct 302643 CCTTCTGCG-CTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCG 302585 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| |||| || || ||||||||||| || || ||||| || Sbjct 302584 AACGAGCTTATCTCCCGTGACGAGGGCCTTCATTGCGACTTCGC 302541 >seq83 Length=609517 Score = 147 bits (162), Expect = 3e-30 Identities = 380/564 (67%), Gaps = 19/564 (3%) Strand=Plus/Plus Query 125018 CATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT 125077 ||| ||||| | ||||| ||||| |||||| || ||||||| || ||||| || || Sbjct 416123 CATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCTGGACGGCGGAGGAGGTGGACCT 416182 Query 125078 GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| |||||| | | | ||| | ||| | || ||||| ||| | || Sbjct 416183 GTCGCCGGACCTCTCCCACTGGCAACACCGTCTCACCCCCGACGAGCGCCGCTTTGTCTC 416242 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | |||||||| |||| ||||||||| |||||| ||| || || | || Sbjct 416243 CCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCGTCGAGAACCTCGCCGCGCG 416302 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || | | | || |||| || || || ||||| ||||| ||| Sbjct 416303 CTTCATGCGCGACGTCCAGC-TCCCCGAGGCC-CGCGCCTTCTACGGGTTCCAGATCGCC 416360 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | ||||| || |||||||| || | |||| ||| | || || Sbjct 416361 ATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCC- 416419 Query 125316 CAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT----GCCGTCTATACGTAAAA 125370 | ||| || || |||| |||| ||||| || || |||||| || || Sbjct 416420 CGACGACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCC-CG---AA 416475 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| |||| ||||||||| | | | || | | |||||| | || | Sbjct 416476 AGGCCGACTGGGCCCTTCGCTGGATCGATTCCTCC--GGCTCCTT-CGCCGAGCGCCTCG 416532 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 | || |||||| ||| |||||||||||||| | ||| | || ||| || ||||| ||| Sbjct 416533 TTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCTATCTTCTGG 416591 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| ||||| ||||||||||| || || | ||||| | || || || ||| Sbjct 416592 CTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGAC 416651 Query 125550 GAGGGCCTACACTGTGACTTTGCC 125573 |||||||| ||||| ||||| ||| Sbjct 416652 GAGGGCCTCCACTGCGACTTCGCC 416675 >seq202 Length=395113 Score = 140 bits (154), Expect = 5e-28 Identities = 385/580 (66%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| |||| || | ||| ||||| | ||||| ||||| |||||| || | Sbjct 244620 TGTTTCCTATCACCTACCCCTCCATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCATTCT 244561 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| || ||||| |||||| | | | ||| || || | | | Sbjct 244560 GGACGGCGGAGGAGGTGGACCTGTCGCCGGACCTCTCCCAGTGGCAGCACCGCCTCTCCG 244501 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | || ||| | | ||||| ||||||| |||||| || |||| Sbjct 244500 ACGACGAGCGCCACTTCGTCTCCCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCG 244441 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || || | || ||| | || || | | | || |||| || || Sbjct 244440 TCCTCGAGAACCTCGCCGCCCGCTTCATGCGCGACGTCCAAC-TCCCCGAGGCC-CGCGC 244383 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| || || |||||| | ||||| || |||||||| || | Sbjct 244382 CTTCTACGGTTTCCAGATTGCAATCGAGAACATCCACTCCGAGATGTACTCCCTTCTACT 244323 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 || | |||||| || || | | || ||||| |||| ||||||| || Sbjct 244322 CGATACGTACATCAAGGACCCCGACCAGAAGTTTCGCCTCTTCCACGCCATCGACAACGT 244263 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | | ||||| | |||| | | ||||| || | | | | || Sbjct 244262 CCCCGCGGTCGCCCGGAAGGCCGACTGGGCCCTCCAATGGATTGA-GTCTTCTGGC--TC 244206 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTT 125472 | |||||| |||| || || |||||| ||| ||||||||||| || || || | || Sbjct 244205 CTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTT 244146 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| ||||||| ||||||||||||||||| ||||||||||| || || | |||| Sbjct 244145 CTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACG 244087 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | || || || ||||||||||| ||||| |||||||| Sbjct 244086 AGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 244047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740795985035400