Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1530 131 1e-25 seq299 82.4 6e-11 >seq1530 Length=69702 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| || | || ||||||||||| || || || || || ||||| || | Sbjct 26093 CCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT 26152 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || ||||||||||| ||||| ||||||| | ||| ||||| ||| Sbjct 26153 AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 26212 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| ||| ||| ||||||| | || ||||| || | ||| || Sbjct 26213 ATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACC 26272 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 26273 TCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCAT 26319 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || || || || || ||||| || ||| | | | || || Sbjct 25198 AACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCTAGGGTGCGACCATCCTC 25257 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| ||||| ||||||| | ||| ||||| ||||| || |||||||| Sbjct 25258 TAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCTTG 25317 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||||||| | || ||||| || | ||| || || | ||| || || || Sbjct 25318 AATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATAGTCTT 25377 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| |||| ||||||||||| Sbjct 25378 GCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| || ||| | | | || ||||||||| Sbjct 24977 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGACCATCCTCTAATTGT 25036 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | ||||| | ||| || || ||||| || |||||||| |||||| Sbjct 25037 TTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTGTCTTGAATTTTA 25096 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || |||||| | ||| || || | ||| ||||| || || || Sbjct 25097 GCT-TTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 25155 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||||||||| Sbjct 25156 GAGAGTCTTAACGAAAATTTGCAT 25179 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| ||||| || || ||| | | |||| ||| Sbjct 25655 ACCAAATGAAGGGTCGATTCCTTTTGGATGTTATAGTCTGCTAGGGTGCGACCGTCCTCT 25714 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | ||||| | || ||||| || || ||||| ||||| | Sbjct 25715 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGA 25774 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | || ||||| || | ||| || || | ||| ||||| ||| Sbjct 25775 ATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTA 25834 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || | ||||||||||| Sbjct 25835 CCGGTGAGGGTCTTGATGAAAATTTGCAT 25863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || || ||||| ||||| || || ||| | | |||| || Sbjct 25426 AACCAAATGAAGGGTCGATTCCTTTTGAATGTTATAGTCTGCTAGGGTGCGACCGTCCTC 25485 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || ||||| | ||||| | || ||||| || || ||||| ||||| Sbjct 25486 TAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 25545 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||||||| | || || || || | ||| || || | ||| ||||| || Sbjct 25546 AATCTTGGCCTTTACATTATCAATTGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTT 25605 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || | ||||||||||| Sbjct 25606 ACCGGTGAGGGTCTTGATGAAAATTTGCAT 25635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| ||||| || || ||| | | |||| ||| Sbjct 25883 ACCAAATGAAGGGTCGATTCCTTTTGGATGTTATAGTCTGCTAGGGTGCGACCGTCCTCT 25942 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | ||||| | || ||||| || || ||||| ||||| | Sbjct 25943 AGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGA 26002 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||| | | | ||||| || | ||| || || | ||| ||||| ||| Sbjct 26003 ATCTTAGCCTTTATATTATTAATGGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTA 26062 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || | ||||||||||| Sbjct 26063 CCGGTGAGAGTCTTAATGAAAATTTGCAT 26091 >seq299 Length=319228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || ||||| || || || | | | | || || ||||| Sbjct 262605 TGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCCAATTGC 262546 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 |||||||| | |||| | |||||||| ||| ||||| || ||||| || ||| Sbjct 262545 TTGCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGTATCTTT 262486 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || ||||| | || || || | || ||||| || || || Sbjct 262485 GC-CTTCACATTGTCGATAGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCGGT 262427 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||||||||| Sbjct 262426 GAGGGTTTTCACAAAAATTTGCAT 262403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362053774513515