Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1190 111 1e-19 seq1530 86.0 5e-12 seq7364 84.2 2e-11 seq267 84.2 2e-11 seq299 82.4 6e-11 seq193 82.4 6e-11 >seq1190 Length=94153 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| | ||| | ||| | ||||||||||| ||||| |||||||||||| Sbjct 59566 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCCGCC 59625 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | || || |||||||| ||| ||| Sbjct 59626 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 59685 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | |||||| ||||| ||| || || || | | ||| || || | || |||| Sbjct 59686 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTC-CGAGCTCTCCAC 59744 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || ||||| ||||| || |||||||| Sbjct 59745 CTCGAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACGAAGATTTGCAT 59792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| | ||| | ||| | ||||||||||| ||||| |||||||||||| Sbjct 40018 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCCGCC 39959 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | || || || ||||| ||| ||| Sbjct 39958 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGA 39899 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| || || || | | | | || || |||| Sbjct 39898 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACC 39839 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| || || || || || || || |||||||| |||||||| Sbjct 39838 TCGAGGGTGATTGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 39792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| ||||| |||||||| |||| || | ||||||| Sbjct 40457 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTC 40398 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || |||||||||||| || | ||||| ||||| Sbjct 40397 CAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 40338 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || ||| || || | ||| || || | || |||| || | ||||||||| | Sbjct 40337 GATCTTCGCCTTGACATTATCGATCGTGTC-CGAGCTCTCCACCTCCAAGGTAATGGTCT 40279 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || || ||||| || ||||| Sbjct 40278 TCCCGGTGAGGGTCTTAACAAAGATCTGCAT 40248 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| ||||| |||||||| |||| || | ||||||| Sbjct 59044 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTC 59103 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || |||||||||||| || | ||||| ||||| Sbjct 59104 CAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 59163 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || ||| || || | ||| || || | || |||| || | ||||||||| | Sbjct 59164 GATCTTCGCCTTGACATTATCGATCGTGTC-CGAGCTCTCCACCTCCAAGGTAATGGTCT 59222 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || || ||||| || ||||| Sbjct 59223 TCCCGGTGAGGGTCTTAACAAAGATCTGCAT 59253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| | ||| | ||| | || || ||||| ||||| |||||||| ||| Sbjct 40246 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCC 40187 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||||| || || ||| | || || |||||||||||| || Sbjct 40186 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGA 40127 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | ||||| ||||| || ||| || || | ||| || || | || |||| Sbjct 40126 ATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTATCGATCGTGTC-CGAGCTCTCCAC 40068 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || | || || ||||| || ||||| Sbjct 40067 CTCCAAGGTAATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 40020 >seq1530 Length=69702 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| | ||||| || | ||||| ||||| ||||||||||| || | Sbjct 26091 TTCCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTG 26150 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | ||||| | ||||| || ||| | || | || ||||| || || Sbjct 26151 CTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGG 26210 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||||||| ||| || ||||| | | | || || || || Sbjct 26211 GAATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGA 26270 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| ||||| || | |||||| || |||||||||||| Sbjct 26271 CCTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| ||||| | || | ||||| Sbjct 24970 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGACCATCCTC 25029 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 | ||||| || ||| | || | || |||||||| | ||| | ||||||||||| Sbjct 25030 TAATTGTTTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTGTCTTG 25089 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||| || | | | ||||||| || || || | ||| ||||| || Sbjct 25090 AATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATGGTCTT 25149 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| || || |||||||||||| Sbjct 25150 GCCGGTGAGAGTCTTAACGAAAATTTGCATT 25180 >seq7364 Length=1738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||| ||||| ||||||| ||| || | | ||||| Sbjct 325 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCTTCCAGAGTGCGGCCATCCTCG 266 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC-ACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || || |||||||||||| | | | || ||||| |||||| Sbjct 265 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGATGAGAAC-CCCTCCTTGTCGTG 207 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| | | | ||| || || |||| || | ||| ||||| || Sbjct 206 GATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTCTT 147 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||||||||| Sbjct 146 TCCGGTGAGGGTTTTGACAAAAATTTGCAT 117 >seq267 Length=345500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||| ||||| ||||||| ||| || | | ||||| Sbjct 56380 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCTTCCAGAGTGCGGCCATCCTCG 56439 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC-ACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || || |||||||||||| | | | || ||||| |||||| Sbjct 56440 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGATGAGAAC-CCCTCCTTGTCGTG 56498 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||| | | | ||| || || |||| || | ||| ||||| || Sbjct 56499 GATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTCTT 56558 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||||||||||||||| Sbjct 56559 TCCGGTGAGGGTTTTGACAAAAATTTGCAT 56588 >seq299 Length=319228 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || |||||||| || |||| || | | ||||| Sbjct 261244 CACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCCTC 261185 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || || | || || || ||||||||| ||| | ||| || ||||| Sbjct 261184 GAGCTGTTTGCCAGCGAAGATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 261125 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| ||| || | || || | ||| ||||| || Sbjct 261124 GATCTTGGCCTTGACATTGTCGATAGTGTCAGAGGATTCAACCTCAAGGGTGATGGTCTT 261065 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||||||||||||| ||||| Sbjct 261064 TCCGGTGAGAGTTTTGACAAAAATCTGCAT 261035 >seq193 Length=408959 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||| |||||||| || || |||||||| || | || | ||||||| Sbjct 265324 CACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCGTCCTC 265265 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || ||||| | |||||||| ||||| ||| || | |||||| ||||| Sbjct 265264 CAGCTGCTTGCCCGCGAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 265205 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | ||| || || | |||| || | || ||||| || Sbjct 265204 AATCTTGGCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAACGTTATGGTCTT 265145 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || || || ||||| Sbjct 265144 CCCAGTGAGAGTCTTCACGAAGATCTGCAT 265115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414429230200510