Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1530 91.5 9e-14 seq299 86.0 4e-12 >seq1530 Length=69702 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || |||| | ||||||||| | || || || || || |||||||| || | Sbjct 26093 CCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT 26152 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || || ||||| || ||| |||||| || | ||||||||| | ||| Sbjct 26153 AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 26212 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| ||||| || |||| |||| |||| | | ||| ||||| | || Sbjct 26213 ATGCCCTCTTTGTCTTGAATCTTGGCCT---TTACATTATCAATGGTGTCAGAAGATTCG 26269 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || || |||||||| |||||||||||||| Sbjct 26270 ACCTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCAT 26319 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCATCC---AATTGCTT 33228 || ||||| ||||| || ||||| |||| ||| | || || ||||| | |||||| Sbjct 260775 GTGGACTCCTTTTGGATGTTGTAGTCAG-CAA---GGGTGCGGCCATCCTCAAGTTGCTT 260720 Query 33229 TCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTG 33288 ||| |||||| || | ||||||||||| |||||| || || || || ||| Sbjct 260719 GCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGC 260660 Query 33289 TTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAG 33348 ||| || | | ||| ||||| || || ||| || || || || || ||||| || || Sbjct 260659 TTTGACATTGTCAATTGTGTCAGAGGATTCAACCTCAAGGGTGATTGTCTTTCCGGTGAG 260600 Query 33349 AGTTTTTACGAAAATTTGCAT 33369 |||||| || || |||||||| Sbjct 260599 AGTTTTGACAAAGATTTGCAT 260579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318667204826670