Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1530 87.8 2e-12 >seq1530 Length=69702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| || || || || || || || |||||||| || | | || | ||| || Sbjct 24970 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGACCATCCTC 25029 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 |||||||| || ||| | || | ||| || ||||| | ||| | || |||||||| Sbjct 25030 TAATTGTTTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTGTCTTG 25089 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| |||||| | ||| || |||| || ||| || | ||| ||||| || Sbjct 25090 AATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATGGTCTT 25149 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||||| | || || || |||||||||||| Sbjct 25150 GCCGGTGAGAGTCTTAACGAAAATTTGCATT 25180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| | ||||| | ||||||||| || |||||||| || || || ||||| || Sbjct 26091 TTCCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTG 26150 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || | ||| || |||||||| || ||| | || | ||| || || || || Sbjct 26151 CTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGG 26210 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||| |||||||| ||| || || || | ||| | || || ||| Sbjct 26211 GAATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGA 26270 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||| ||||| || ||||| | ||||| || |||||||||||| Sbjct 26271 CCTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419441893674615