Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq333 93.3 4e-14 >seq333 Length=298024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 5584 CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA 5643 |||| |||||||||||| || || |||||| ||| ||||||||||| | ||| Sbjct 41025 CTCGATGATCAGCTGCGCAATCCGATCGCCCTCCTTCACCTCGAAATCCACATCCGAGAA 41084 Query 5644 GTTGAACAGCACCACGCCCACGTTG-CCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCA 5702 |||||||| || ||||||| || | || | ||| || || || |||||||| || |||| Sbjct 41085 ATTGAACAGAACGACGCCCA-GTGGCCCTCTGTAATCCGCATCGATCACGCCTGCTCCCA 41143 Query 5703 CGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 |||| || ||||||| || | ||||| || ||||| Sbjct 41144 CGTCAATCGAGTGCTTCCAAGCTAATCCGGACCGAGGAGC 41183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905468801480