Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1190 98.7 8e-16 seq193 96.9 3e-15 seq1710 93.3 4e-14 seq274 87.8 2e-12 seq1066 84.2 2e-11 >seq1190 Length=94153 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||||||||| || | ||||| |||||| Sbjct 59818 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCCTCGAGCTGC 59877 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | | |||||| ||| || | | ||||| ||| ||| || Sbjct 59878 TTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGAATCTTA 59937 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | | |||| ||||| || ||||| || |||||| Sbjct 59938 GCCTTGACATTGTCGATGGTGTCAGAACTCTCCACCTCGAGGGTGATGGTCTTTCCGGTG 59997 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || ||||||||| Sbjct 59998 AGAGTTTTGACGAAGATCTGCATC 60021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| | ||| | ||||| ||| ||||| |||||||||||||| ||| Sbjct 40246 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCC 40187 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||||||||||||| || | | || | | |||||||||| || Sbjct 40186 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGA 40127 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || ||| ||||| | | || || || | |||| | Sbjct 40126 ATCCCCTCCTTGTCCTGGATCTTCGCCTTGACATTATCGATCGTGTCCGAGCTCTCCACC 40067 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || |||||||| || || ||||| |||||||| Sbjct 40066 TCCAAGGTAATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 40020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| |||||||||||||| |||| || |||||||||||||| Sbjct 40450 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCCAGCTGC 40391 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | | |||||||||| || | | ||||||||| || ||| Sbjct 40390 TTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTC 40331 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | |||| ||| | || ||||| || |||||| Sbjct 40330 GCCTTGACATTATCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCGGTG 40271 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 40270 AGGGTCTTAACAAAGATCTGCAT 40248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| |||||||||||||| |||| || |||||||||||||| Sbjct 59051 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCCAGCTGC 59110 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | | |||||||||| || | | ||||||||| || ||| Sbjct 59111 TTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTC 59170 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | |||| ||| | || ||||| || |||||| Sbjct 59171 GCCTTGACATTATCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCGGTG 59230 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 59231 AGGGTCTTAACAAAGATCTGCAT 59253 >seq193 Length=408959 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || |||| ||| ||||||| |||||||| ||| || | Sbjct 265533 TCCTTCTGTATGTTGTAGTCCGCCAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAG 265474 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | | |||||||||| ||| | | ||||||||| || || ||||| | | Sbjct 265473 ATGAGCCTCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTG 265414 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| || | |||| ||| | ||| || || || |||||||||||||| | Sbjct 265413 TCG--ATGGTGTCCGAGCTCTCCACCTCCAGTGTGATCGTCTTCCCGGTGAGAGTTTTGA 265356 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 265355 CAAATATCTGCATC 265342 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || || |||||| || |||||||||||||| | | || || |||||| Sbjct 265324 CACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGC-CGTCCT 265266 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || | || | | ||||| ||| || | | ||||||||| Sbjct 265265 CCAGCTGCTTGCCCGCGAAGATAAGTCTTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCT 265206 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||| | | | || ||||| || | | |||| ||| | |||||||| Sbjct 265205 GAATCTTGGCCTTCACGTTGTCG--ATGGTGTCTGAACTCTCCACCTCCAACGTTATGGT 265148 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| ||||| || ||||||||| Sbjct 265147 CTTCCCAGTGAGAGTCTTCACGAAGATCTGCATC 265114 >seq1710 Length=60682 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| |||||| |||||||| || || ||||| || | ||||| Sbjct 24868 CACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTC 24927 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | | |||||| ||| || | | ||||||||| Sbjct 24928 GAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 24987 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||| ||||| | | || || || || | ||| ||||| || ||||| Sbjct 24988 GATTTTGGCCTTGACGTTGTCG--ATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTC 25045 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| |||||||| |||||||| Sbjct 25046 TTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 25077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| |||||| |||||||| || || ||||| || | ||||| Sbjct 23149 CACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTC 23090 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | | |||||| ||| || | | ||||||||| Sbjct 23089 GAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 23030 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||| ||| | | | || || || || | ||| ||||| || ||||| Sbjct 23029 GATTTTGGCCTTAACGTTGTCG--ATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTC 22972 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| |||||||| |||||||| Sbjct 22971 TTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 22940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || ||||| || |||| || |||||| Sbjct 22686 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGC 22627 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || | || | | |||||| || || | | |||||||| || || Sbjct 22626 TTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTG 22567 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| || ||| ||| | || ||||| || || ||| Sbjct 22566 GCCTTGACATTGTCGATGGTGTCGGAGGATTCCACCTCTAGGGTGATGGTCTTGCCAGTG 22507 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 22506 AGGGTTTTCACGAAGATCTGCATC 22483 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || ||||| || |||| || ||||||||||| || | Sbjct 22903 CTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 22844 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | | ||||||||| ||||| ||| | | Sbjct 22843 GATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTAACGTT 22784 Query 48653 GACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || || || | || | || | |||| || ||||| || ||||||||||| || Sbjct 22783 GTCG--ATCGTGTCCG-AGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 22727 Query 48712 CACAAAAATCTGCAT 48726 |||||| |||||||| Sbjct 22726 CACAAAGATCTGCAT 22712 >seq274 Length=340361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 197025 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 196966 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | |||||||||| || || Sbjct 196965 TTCCCGGCGAAGATGAGCCGCTGCTGATCCTGAGGAATCCCTTCCTTGTCCTGGATCTTG 196906 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | || ||||| || | |||||| ||||| || || || || |||| Sbjct 196905 GCTTTGACGTTGTCG--ATGGTGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGG 196848 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| | ||||| || ||||||||| Sbjct 196847 TGAGGTTCTTCACGAAGATCTGCATC 196822 >seq1066 Length=105919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | ||| | ||||| |||||| Sbjct 79647 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 79588 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| ||| | | ||||||||| ||| || Sbjct 79587 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 79528 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | || || || | || ||| ||||| || || || || || || Sbjct 79527 GCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTC 79468 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTC 48732 || || ||||| || ||||||||| |||| Sbjct 79467 AGCGTCTTCACGAAGATCTGCATCTTGTC 79439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421105317418415