Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq125 102 1e-16 seq83 95.1 2e-14 >seq125 Length=520858 Score = 102 bits (112), Expect = 1e-16 Identities = 245/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||| || || |||||||| | || || ||||| || || ||||| Sbjct 302538 CAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 302597 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || |||||||| || | ||| || ||||| |||||| Sbjct 302598 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 302657 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGT 33480 ||||| || || || ||||| | || || ||| || ||| | || | | | Sbjct 302658 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTCA 302714 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| |||||||| ||| | || | ||| || |||||| Sbjct 302715 ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGAGACAGAGGGGACCGTGTCGATGGCACGG 302774 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 |||||| | | || || | | || || | || || || | | || ||||| Sbjct 302775 AAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACATC 302834 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | | Sbjct 302835 TCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGC 302894 Query 33661 TGTACTTC 33668 || || || Sbjct 302895 TGGACGTC 302902 >seq83 Length=609517 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || ||||||||||| || ||||| Sbjct 416677 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 416618 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| || || || ||||| || || | ||| || || || |||||| Sbjct 416617 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAG 416558 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAA 33448 || || || || ||| || ||||||| Sbjct 416557 ATGCCCTCGAC-GCAGGCGAAGGCAA 416533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622725936941400