Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1710 89.7 5e-13 seq274 86.0 6e-12 >seq1710 Length=60682 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| |||||| ||||| || || || || || || || Sbjct 23228 GACACGATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 23287 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || ||||| |||| | | | | |||||||||| Sbjct 23288 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 23347 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || | |||||||| |||||||| || ||||| Sbjct 23348 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 23394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | |||||| | || | ||||| | Sbjct 22484 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTGGAATCCTCC 22543 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || ||||| || Sbjct 22544 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCAG 22603 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || || || || |||||||| | | | | | |||||| ||| Sbjct 22604 CAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTACAAC 22663 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || |||| || || || Sbjct 22664 ATTCAGAAGGAGTCCACCCTCCACCTCGTGCT 22695 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| || || ||||| || || || ||||| || || Sbjct 25017 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 24958 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || ||||| |||| | | | | |||||||||| Sbjct 24957 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 24898 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || | |||||||| |||||||| || ||||| Sbjct 24897 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 24851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || || ||||| || || || || || || | || |||||| || ||||| Sbjct 23033 GACAAGGAGGGCATCCCTCCGGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAG 23092 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | ||||||||||||||| || || || || | |||||||| ||| Sbjct 23093 GATGGCCGCACCTTGGCCGACTATAACATTCAGAAGGAGTCCACCCTTCATCTGGTGCTG 23152 Query 26982 AGACTTAGAGGAGG 26995 ||||| || ||||| Sbjct 23153 AGACTCAGGGGAGG 23166 >seq274 Length=340361 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAA-AACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || ||||| | || || || ||| | | | |||| | |||| ||| |||| | || || Sbjct 196820 AAGATGCAGATCTTCGTGAAGAACCTCACCGGGAAGA-CGATTACCCTCGAGGTGGAGTC 196878 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||| | |||||| ||||| ||||| |||||||| |||| || Sbjct 196879 ATCGGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCTCAGGA 196938 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | ||||| | || ||| || || ||||| || | | | | || |||||| Sbjct 196939 TCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 196998 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || |||| || ||||| Sbjct 196999 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 197034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478492385098800