Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq375 102 2e-16 seq1475 89.7 1e-12 >seq375 Length=269902 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 371067 TGCTCGAAGAGACGATCCTTTGCAACGTCTCCCGCACCATGACTAATGATGGAATCCTTC 371126 || || || || || ||||| | || | | |||||||| ||| ||| | || | Sbjct 128933 TGGTCAAACAGCCGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGC 128874 Query 371127 TCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTCTGTTGGCGCGCGTGTA 371186 ||||||||||||| || ||||||||||| || || |||||||||| |||| | ||| Sbjct 128873 TCCATCTCACCAAACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCTGGCTGTCTGGTA 128814 Query 371187 AGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAACTACCATGTGCTTGAGG 371246 |||| ||| | ||| || || | ||| ||| ||| | ||||||||||| || Sbjct 128813 AGTATCTGCACAGGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGT 128754 Query 371247 CGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 | ||||||||| ||| ||| ||| ||||||| Sbjct 128753 CTCTGATAATATGTAGGACCAAGAAATATCATAG 128720 >seq1475 Length=72375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| || |||||| | |||||| | || | Sbjct 28284 ATGAAAGAAGATAGCATTGAGGGGATATATGATACGCTTAAGGAGTGTGCTATAATAAGC 28343 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| || || ||||||||||| || | ||||| | || || |||| |||||| || Sbjct 28344 AAGTCAGCTGGAGGAATTGGTGTTTCTGTTCACAACATCCGAGCAACAG-GCAGTTATAT 28402 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| || ||||| | ||||| ||||| | ||||| | |||| Sbjct 28403 CCGTGGGACAAATGGAACATCTAATGGTATTGTTCCAATGCTAAGGGTGTTCAATGATAC 28462 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 28463 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 28501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302879091720530