Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1710 104 2e-17 seq1190 89.7 4e-13 >seq1710 Length=60682 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || ||| | || |||||| | Sbjct 23168 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTCGAGAGCTCT 23227 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| ||||| || || || || || || || Sbjct 23228 GACACGATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 23287 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| ||||| |||| | | | | | ||| |||||| Sbjct 23288 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 23347 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || ||||| | ||| | ||| | || ||||| Sbjct 23348 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 23394 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| |||||| | Sbjct 25077 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 25018 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || || ||||| || ||||| ||||| || || Sbjct 25017 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 24958 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| ||||| |||| | | | | | ||| |||||| Sbjct 24957 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 24898 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || ||||| | ||| | ||| | || ||||| Sbjct 24897 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 24851 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| |||| |||||| | Sbjct 22940 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 22999 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || || ||||| || ||||| ||||| || || Sbjct 23000 GACACGATCGACAACGTTAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 23059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| ||||| |||| | | | | | ||| |||||| Sbjct 23060 CAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 23119 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || ||||| | ||| | ||| | || ||||| Sbjct 23120 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 23166 >seq1190 Length=94153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | || ||| |||| || ||| | Sbjct 59792 ATGCAAATCTTCGTCAAGACTTTGACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 59733 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 59732 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 59673 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||||||||| || || |||| | | | | | ||||| ||| Sbjct 59672 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAAC 59613 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| |||| | ||| | || | || ||||| Sbjct 59612 ATTCAGAAGGAGTCTACCCTTCACCTTGTGCTGAGGCTTAGGGGAGG 59566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429787109804325