Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1530 95.1 1e-14 seq299 89.7 4e-13 seq1710 84.2 2e-11 >seq1530 Length=69702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| ||||| || || ||||| ||| | || || || Sbjct 26320 AATGCAAATTTTCGTTAAAACTCTCACCGGTAAGACCATCACCCTTGAGGTCGAATCTTC 26261 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | ||||| || ||| || ||||| ||| | ||| || || Sbjct 26260 TGACACCATTGATAATGTAAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCA 26201 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || ||||||||||| |||| ||| | || || || || Sbjct 26200 GCAAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAA 26141 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| || || ||||| | ||| ||||| | || ||| | ||||||| Sbjct 26140 TATTCAGAAGGAATCTACCCTTCATTTGGTGCTCAGGTTGAGGGGAGGAA 26091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || || || ||||| || || ||||| ||| | || || || Sbjct 25180 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTC 25121 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||| ||| ||| | || ||| |||||| || ||||| || | ||| | ||||| Sbjct 25120 CGATACTATTGATAATGTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGATCA 25061 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | || | ||| || ||||||||||| |||| ||| | || || || || Sbjct 25060 GCAAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTACAA 25001 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| || || ||||| || | || ||||| Sbjct 25000 CATCCAGAAGGAGTCCACCCTCCACCTGGTG 24970 >seq299 Length=319228 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| ||||| ||||| ||||| ||| | || || ||| Sbjct 260807 ATGCAAATCTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 260866 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || |||||| | ||| ||||| Sbjct 260867 GACACCATTG-ACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 260925 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | || |||||||| | || |||| | ||| ||||||| || || Sbjct 260926 GCAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAA 260985 Query 115465 CATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 260986 TATCCAGAAGGAGTCCAC 261003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||||||||| ||||| ||||| ||||| ||| | || || ||| Sbjct 261035 ATGCAGATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 261094 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | |||| || || || || || || |||||| | ||| ||||| Sbjct 261095 GACACTATCG-ACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 261153 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | || |||||||| | || |||| | ||| ||||||| || || Sbjct 261154 GCAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAA 261213 Query 115465 CATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 261214 TATCCAGAAGGAGTCCAC 261231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || || ||||| || | || ||| | Sbjct 262175 ATGCAAATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 262234 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || ||| || || || |||||| | || || || Sbjct 262235 GACAC-CATCGACAATGTGAAGGCAAAGATACAGGACAAGGAAGGCATTCCTCCAGACCA 262293 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||| ||||| ||||| || |||| | ||| |||| || ||||| Sbjct 262294 GCAAAGGCTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTGGCTGACTATAA 262353 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || || ||||| Sbjct 262354 CATCCAGAAGGAATCTAC 262371 >seq1710 Length=60682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| || || ||||| ||| |||| ||| | Sbjct 22940 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 22999 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || || ||||| || || || ||| |||| || || Sbjct 23000 GACAC-GATCGACAACGTTAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCA 23058 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | || ||||| || | || |||| | ||| ||||||| ||||| Sbjct 23059 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAA 23118 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| || | ||| ||||| ||||| | | ||||| Sbjct 23119 CATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 23166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| || || ||||| ||| |||| ||| | Sbjct 25077 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 25018 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || || ||||| || || || ||| |||| || || Sbjct 25017 GACAC-GATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCA 24959 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | || ||||| || | || |||| | ||| ||||||| ||||| Sbjct 24958 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAA 24899 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| || ||||| || | ||| ||||| ||||| | | ||||| Sbjct 24898 CATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 24851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425196700049800