Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4661 131 1e-25 seq3436 131 1e-25 seq2878 131 1e-25 seq3534 127 1e-24 seq1041 127 1e-24 seq122 122 6e-23 seq3 122 6e-23 seq3230 116 2e-21 seq1567 104 2e-17 seq455 104 2e-17 seq5371 102 5e-17 seq3967 102 5e-17 seq3700 102 5e-17 seq1856 100 2e-16 seq1571 100 2e-16 seq1179 100 2e-16 seq964 100 2e-16 seq511 100 2e-16 seq155 96.9 2e-15 seq138 93.3 3e-14 seq1530 86.0 4e-12 >seq4661 Length=9945 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 6136 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 6195 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6196 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6230 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 8337 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 8396 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 8397 GCCCATATTTAGCCTT 8412 >seq3436 Length=20345 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 16609 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 16668 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16669 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16703 >seq2878 Length=28104 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 19208 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 19267 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 19268 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 19302 >seq3534 Length=19197 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 7411 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 7352 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7351 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||| || | ||||||||||||||||||||| | Sbjct 265 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCGTCGTGTTACTTGTTCGCTATCGGTCTCTC 324 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 325 GCCCATATTTAGCCTT 340 >seq1041 Length=108670 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 97366 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 97307 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 97306 TAATCCATTCATGCGCGTCACTAATTAGATGAC 97274 >seq122 Length=524690 Score = 122 bits (134), Expect = 6e-23 Identities = 82/92 (89%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25898 TAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATC 25952 || |||||||||||||||||||||||||||||| ||||||||| |||| || |||| Sbjct 113853 TACTAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATC 113794 Query 25953 TCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||| ||||||||||||||||||||| Sbjct 113793 TCGTTAATCCATTCATGCGCGTCACTAATTAG 113762 >seq3 Length=1478877 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 491096 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 491037 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||||||| Sbjct 491036 TAATCCATTCATGTGCGTCACTAATTAGATGACGA 491002 >seq3230 Length=22797 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||||||||||||| |||||||||| ||||||||| |||| || ||||||||| Sbjct 16269 AGCCCGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTT 16328 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||| |||||||||||| ||||||| Sbjct 16329 AATCCATTCATGCACGTCACTAATTAAATGACGA 16362 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||||||||| || | |||||| Sbjct 17781 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAGATAGGGACAGTGGGACTCTCGT 17840 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| || |||||||||||||||||| Sbjct 17841 TAATCCATTCATGTGCATCACTAATTAGATGACGA 17875 >seq1567 Length=67636 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 50566 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 50507 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 50506 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 50472 >seq455 Length=231158 Score = 104 bits (114), Expect = 2e-17 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGT 25956 |||||| || |||||||| ||||||| || ||||||||| |||| || |||||||| Sbjct 208682 AAGCCCATTTCCTTGGCTATGGTTTCACTGGATAGTAGACAGGGACAGTGAGAATCTCGT 208623 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||| ||||||||||||||||||| Sbjct 208622 TAATCCATTCATGCGTGTCACTAATTAGATGACGA 208588 >seq5371 Length=6034 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 5236 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 5295 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 5296 GCCCATATTTAGCCTT 5311 >seq3967 Length=15081 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13648 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13589 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 13588 GCCCATATTTAGCCTT 13573 >seq3700 Length=17523 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 11856 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 11915 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 11916 GCCCATATTTAGCCTT 11931 Score = 100 bits (110), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| ||||||||| || | || |||||||| Sbjct 9855 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGACAGAGACAGTGGGAATCTCGT 9914 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||| |||||| ||||||||||||||| Sbjct 9915 TAATCCATTCATGTACGTCACTAATTAGAT 9944 >seq1856 Length=54004 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 22844 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 22785 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 22784 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 22750 >seq1571 Length=67319 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 19470 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 19529 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 19530 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 19564 >seq1179 Length=95034 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 14748 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 14689 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 14688 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 14654 >seq964 Length=116386 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 38438 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 38379 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 38378 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 38344 >seq511 Length=212602 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 822 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 763 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | | ||||| || |||||||||||||||| Sbjct 762 GAATACAGTAATGCGGGTGACTAATTAGATGACGA 728 >seq155 Length=467968 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| || |||| ||||||||| |||||||||||||||||||||||| | Sbjct 254617 CTCTCTTTTCAAAGTCCTCTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 254558 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 254557 GCCCATATTTAGCCTT 254542 >seq138 Length=501928 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| |||| || ||||||||| |||||||||||||||||||||||| | Sbjct 440586 CTCTCTTTTCAAAGTCCTTTACATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 440645 Query 20007 GGTAATATTTAGCCTT 20022 | ||| |||||||| Sbjct 440646 GCCCATACTTAGCCTT 440661 >seq1530 Length=69702 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || ||||| | | |||||||||||| || ||||| ||||||||||| | Sbjct 26089 CATT-CCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGT 26147 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || ||||||||||| || |||||||| | | ||| || || | Sbjct 26148 CTGCTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTG 26207 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||| |||||||| ||| || ||| ||||| | | || || | || Sbjct 26208 GGGGAATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATT 26267 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || || ||||| || | ||||| ||||| || ||||| Sbjct 26268 CGACCTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCAT 26319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334831205167865