Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7364 89.7 4e-13 seq267 89.7 4e-13 seq1530 82.4 5e-11 >seq7364 Length=1738 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || ||||| ||| |||| ||| | || Sbjct 117 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 176 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | ||| | ||||| ||| || ||| || ||||| | | | || Sbjct 177 GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGGGTTCTCATCGGATCAG 236 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||| || || ||| ||| ||| ||||||| Sbjct 237 CAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACAGC 296 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| |||||||| |||| Sbjct 297 ATTCAGAAGGAATCCACTCTTCACCTGGT 325 >seq267 Length=345500 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || ||||| ||| |||| ||| | || Sbjct 56588 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 56529 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | ||| | ||||| ||| || ||| || ||||| | | | || Sbjct 56528 GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGGGTTCTCATCGGATCAG 56469 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || ||||| || || ||| ||| ||| ||||||| Sbjct 56468 CAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACAGC 56409 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| |||||||| |||| Sbjct 56408 ATTCAGAAGGAATCCACTCTTCACCTGGT 56380 >seq1530 Length=69702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| | || || || ||||| ||| | || ||| | | Sbjct 26320 AATGCAAATTTTCGTTAAAACTCTCACCGGTAAGACCATCACCCTTGAGGTCGAATCTTC 26261 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || ||| || |||||||| | || | |||| Sbjct 26260 TGACACCATTGATAATGTAAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCA 26201 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || |||||||| |||||| |||| ||| || | || || ||||| Sbjct 26200 GCAAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAA 26141 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||||||| |||||| |||| Sbjct 26140 TATTCAGAAGGAATCTACCCTTCATTTGGT 26111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358000778583910