Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq83 358 1e-93 seq1439 340 3e-88 seq125 329 6e-85 seq202 320 3e-82 >seq83 Length=609517 Score = 358 bits (396), Expect = 1e-93 Identities = 521/729 (71%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| || ||||| ||| |||||||| ||| | | |||||| Sbjct 416250 CTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCGTCGAGAACCTCGCCGCGCGCTTCATG 416309 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| ||||||||| |||||||| ||||| |||||| Sbjct 416310 CGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAC 416369 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA-GCG 42601 | ||||| ||| ||||| || || ||| |||| ||| || ||| |||| ||| | Sbjct 416370 ATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAG 416429 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | | || ||| | ||||| || || | ||| | || ||||| |||||||| Sbjct 416430 TATC-GCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGC 416488 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || ||||||||| | || || | |||| |||| | || || ||||| || Sbjct 416489 CCTTCGCTGGATCGA---TTCCTCCGGCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTG 416545 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||||||||||||||| ||| ||||| | | ||||||||||||||| | | | Sbjct 416546 CGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCTATCTTCTGGCTCAAG-AAACGCG 416604 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | |||||||| ||||||||||| |||||||||||| | | |||||||| || || Sbjct 416605 GCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACT 416664 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | ||||| |||||||||| ||| |||| |||| | |||||| || |||| || Sbjct 416665 GCGACTTCGCCTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCCGAGGAAGCGG 416721 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGCAGTCG 42956 ||||||| ||| | |||| || || || ||||| ||||||| || ||||| Sbjct 416722 TCCGGGCAATCGTTGCGGACGCTGTTGACATCGAACGGGAGTTCGTCTGCGACGCA---- 416777 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || || | || ||||| |||||| || |||||| || |||||||| ||| ||| Sbjct 416778 CTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTG 416837 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||||| || || | | |||| | | || | ||| || | ||||||| Sbjct 416838 GCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTC 416897 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| ||||||| || |||| ||| ||||||| ||||||||| | || | | Sbjct 416898 GACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTAGGC 416957 Query 43137 GACTACCAG 43145 || |||||| Sbjct 416958 GAGTACCAG 416966 >seq1439 Length=74689 Score = 340 bits (376), Expect = 3e-88 Identities = 519/728 (71%), Gaps = 16/728 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| ||| ||||||||||| ||| |||||||| Sbjct 62921 CTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGACCCGGTTCATG 62862 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 || || ||| ||| |||||| ||| |||||||||||||||||| ||||| |||| Sbjct 62861 CGCGACGTCCAG--CTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGA 62804 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | ||||||||| |||| | || ||| |||| |||||| ||| |||| |||| Sbjct 62803 ACATCCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGA 62744 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGACTGG 42659 | | || ||| | ||||| || || | |||| | || ||||| || ||| Sbjct 62743 AGTCCCGCCTCTTCCATGCCATTGACACCGT-CCCTCCTGTCGCCCGCAAGGCCGAGTGG 62685 Query 42660 GCGCTCAACTGGATCGAGAGTC-CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||||| |||||||| || | | ||| || |||| |||| | || || ||||| | Sbjct 62684 GCGCTACGCTGGATCG-GATCCTCTGACTCA---TTCGCCGAGCGCCTCGTTGCCTTCGC 62629 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 | ||||||||||||||||||||| ||| ||||| | ||||||||||||||||| || Sbjct 62628 CTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 62569 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || ||||| || |||||||| || ||||| |||||| | | |||||||| || | Sbjct 62568 AGGCCTC-ATGCCGGGTCTCACCTTTTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCC 62510 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||| |||||||||| ||| || | || | |||||| ||| || | | Sbjct 62509 ACTGCGACTTCGCCTGCCTCC---TCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACC 62453 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | ||||| | ||| | | || ||||| || ||||| ||| ||| || | | | Sbjct 62452 GTGTCCGTGAAATCGTTGCCGATGCCGTTGACATCGAACGGGAATTCGTCTGCGATGCTC 62393 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 |||| || |||| ||||| ||||| |||||||||| | |||| ||| ||| ||| | Sbjct 62392 TGCCGGTCGCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTGG 62333 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 |||| | || || | | | ||| | | | ||| || | |||||||| Sbjct 62332 CCGATCGCCTGCTTGGGGCGCTAGGTTACGACAAGTTGTACGGGGCGGCCAACCCCTTCG 62273 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 ||| |||||| ||||||| || |||| ||||| ||||| ||||||||| | |||| || Sbjct 62272 ACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCG 62213 Query 43138 ACTACCAG 43145 |||| ||| Sbjct 62212 ACTATCAG 62205 >seq125 Length=520858 Score = 329 bits (364), Expect = 6e-85 Identities = 519/736 (71%), Gaps = 32/736 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| |||||||| ||| |||||| || ||| || |||||||| Sbjct 302965 CTTGCTTTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAATCTCGCCGCCCGGTTCATG 302906 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 302905 CGCGACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 302846 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| ||||| || || || |||| |||||| ||| || | |||| Sbjct 302845 ATCCACTCTGAGATGTACTCCCTCCTCCTGGACACCTACATCAAGGACCCTGACGAGAAG 302786 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || ||| ||||| || ||| | || ||| || || ||||| ||||||| Sbjct 302785 ACCCGTCTCTTCCGTGCCATCGACACGGTCCCCTCTGTCTCCCGA--AAGGCCGACTGGG 302728 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | ||| | |||| | |||| | | || ||||| || Sbjct 302727 CCCTGCGCTGGATTGAATCTTCCGGC---TCGTTTGCCGAGCGAATTGTCGCCTTCGCCT 302671 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 |||||||| ||||||||||| ||| ||||| | | ||||| ||||||||| || | Sbjct 302670 GTGTCGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCG 302611 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | || ||||| || ||||||||||||||||| || ||| | | |||||||| || ||| Sbjct 302610 GCCTC-ATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCAT 302552 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | ||||| || ||||||| ||| |||| |||| | |||||| ||| |||| || Sbjct 302551 TGCGACTTCGCTTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGT 302495 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 |||||||||||| | | || || || || |||||| |||||| | | | || Sbjct 302494 GTCCGGGCCATCGTTGCCGACGCTGTTGACATCGAGCGGGAGTTTGTTTGTGACGCCCTT 302435 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||||| |||| || || |||||| |||||| ||| || ||||||| ||| ||| ||| Sbjct 302434 CCCGTAGCCCTCGTTGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTCGTGGCC 302375 Query 43020 GACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACA----CGCCGTG----- 43069 |||| || || | | || ||||| | | | || | | ||| Sbjct 302374 GACCGCCTGCTCGAGTCA-CTGGGT---------CACGATAAGATGTTTGGGGTGGTCAA 302325 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||||||||||| |||||| ||||||| || |||| ||||| ||||| ||||| ||| | Sbjct 302324 CCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACGAACTTCTTCGAAAAGAG 302265 Query 43130 CGTCGCCGACTACCAG 43145 || | || |||||| Sbjct 302264 GGTTGGAGATTACCAG 302249 >seq202 Length=395113 Score = 320 bits (354), Expect = 3e-82 Identities = 510/725 (70%), Gaps = 10/725 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| ||| |||||||| ||| || | |||||| Sbjct 244471 CTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCGCTTCATG 244412 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || | ||||| ||| ||||||||| |||||||| || || |||||| Sbjct 244411 CGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATCGAGAAC 244352 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC-G 42601 | ||||| ||| ||||| || || ||| | ||||||||| ||| |||| | || | Sbjct 244351 ATCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACCAGAAG 244292 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | || || ||| | ||||| || | | ||| || |||||| |||||||| Sbjct 244291 TTTCGC-CTCTTCCACGCCATCGACAACGTCCCCGCGGTCGCCCGGAAGGCCGACTGGGC 244233 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| | ||||| ||| | | | | | |||| |||| | || || ||||| || Sbjct 244232 CCTCCAATGGATTGAGTCTTCTGGCTCC---TTCGCCGAGCGACTCGTCGCCTTCGCCTG 244176 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||||||||| ||||| ||| ||||| | ||||||||||||||||| || || Sbjct 244175 CGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 244116 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || |||||||| ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 244115 CCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACT 244057 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | |||||||| |||||||| | | ||| |||| | |||||| ||| |||| || Sbjct 244056 GCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCGAGGACAAGG 244000 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 ||||||| ||| | | || ||||| || |||||| ||||||| || | | |||| Sbjct 243999 TCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCGACGCCCTGC 243940 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 |||| | || ||||| ||||| | ||| ||| || |||||||| ||| |||||| Sbjct 243939 CCGTCGCGCTCGTCGGGATGAATGGTGTCCTGATGAGCCAGTACATCGAGTTTATCGCCG 243880 Query 43021 ACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 ||| || || | | |||| | || | ||| | ||| ||||||| Sbjct 243879 ACCGCCTGCTCGGGGCGCTGGGCTACGGCAAGATGTACGGGGTCTCCAACCCTTTCGACT 243820 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 ||||| ||||||| || |||| ||||||||||| |||||||| | |||| || | Sbjct 243819 GGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGGTCGGTGAGT 243760 Query 43141 ACCAG 43145 ||||| Sbjct 243759 ACCAG 243755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944003782520400