Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1710 102 6e-17 seq1190 96.9 3e-15 seq193 95.1 1e-14 seq1530 82.4 6e-11 seq540 82.4 6e-11 >seq1710 Length=60682 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || | ||||||||||||||| ||| ||||||||||||||| || || ||| Sbjct 23166 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 23107 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||||||||| || ||||| | |||||| ||| || Sbjct 23106 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 23047 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || ||| |||||| ||||| ||||| | | | || | || | ||| Sbjct 23046 ATGCCCTCCTTGTCCTGGATTTTGGCCTTAACGTTGTCGATCGTGTCCG-AGCTCTCGAC 22988 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||| ||||| Sbjct 22987 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 22940 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || | ||||||||||||||| ||| ||||||||||||||| || || ||| Sbjct 24851 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 24910 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||||||||| || ||||| | |||||| ||| || Sbjct 24911 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 24970 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || ||| |||||| ||||| ||| | | | | || | || | ||| Sbjct 24971 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGTGTCCG-AGCTCTCGAC 25029 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||| ||||| Sbjct 25030 CTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 25077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || | ||||||||||||||| ||| ||||||||||||||| || || ||| Sbjct 23394 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 23335 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||||||||| || ||||| | |||||| ||| || Sbjct 23334 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 23275 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 23274 ATACCCTCCTTGTCC 23260 >seq1190 Length=94153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| |||||| || ||||| ||| ||||||||||||||||||||||||| Sbjct 59255 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCC 59314 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||||||||| || || | ||||| ||| ||| Sbjct 59315 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGCGGA 59374 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 59375 ATACCCTCCTTGTCCTGAATCTT 59397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct 40246 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCC 40187 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| || ||||| || || | |||||||||| || Sbjct 40186 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGA 40127 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 40126 ATCCCCTCCTTGTCC 40112 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| |||||| || ||||| || ||||||||||||||||||||| || Sbjct 59565 ACCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCCGC 59624 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || || | |||||||||||||| || || | |||||| ||| || Sbjct 59625 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGG 59684 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 59685 AATGCCCTCCTTGTCCTGAATCTT 59708 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| ||||||||||||||||||||||||| || Sbjct 40465 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGG 40406 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| || ||||| || || | |||||||||| || | | ||| Sbjct 40405 CCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCC 40346 Query 34030 TTGTCC 34035 |||||| Sbjct 40345 TTGTCC 40340 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| ||||||||||||||||||||||||| || Sbjct 59036 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGG 59095 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| || ||||| || || | |||||||||| || | | ||| Sbjct 59096 CCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCC 59155 Query 34030 TTGTCC 34035 |||||| Sbjct 59156 TTGTCC 59161 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| |||||| || ||||| || ||||||||||||||||||||| ||| Sbjct 40018 CCTCCCCTAAGCCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCCGCC 39959 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||||||||| || || | ||||| ||| || Sbjct 39958 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGA 39899 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 39898 ATACCCTCCTTGTCCTGAATCTT 39876 >seq193 Length=408959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| |||||||||||| |||||| ||||||||| ||||||||||| || Sbjct 265113 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 265054 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | || ||||| ||||| || || | ||||| ||| ||| Sbjct 265053 AGAGTG-CGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGG 264995 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 264994 GATGCCCTCCTTGTCC 264979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||||||||||||| ||||| ||||||||| ||||||||||| || Sbjct 265341 CCTCCCCTGAGTCGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 265282 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| |||| |||||||| || || || || | ||||| ||| || Sbjct 265281 AGAGTG-CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATAAGTCTTTGCTGGTCCGGAGG 265223 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||| || Sbjct 265222 GATGCCCTCCTTGTCCTGAATCTT 265199 >seq1530 Length=69702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| || ||||||| |||||| || ||||||||||| ||||| ||||| Sbjct 26093 CCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT 26152 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || ||||| || || |||||||||| | ||||| || || Sbjct 26153 AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGA 26212 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||||||||| ||| || ||| | | | | |||| ||||||| Sbjct 26213 ATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACC 26272 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | || || || || ||||| || ||||| || || ||||||||| Sbjct 26273 TCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 >seq540 Length=201599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || || || || ||||| ||| ||||||||| |||||||| || || | | || || Sbjct 109996 AGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTG-CG 110054 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||| |||||||| || ||||||||||| ||| ||| | | ||| Sbjct 110055 CCCGTCCTCGAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTC 110114 Query 34029 TTTGTCC 34035 |||||| Sbjct 110115 CTTGTCC 110121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396924894188830