Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1439 141 2e-28 seq83 134 3e-26 >seq1439 Length=74689 Score = 141 bits (156), Expect = 2e-28 Identities = 318/472 (67%), Gaps = 8/472 (2%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 ||||| || ||||| ||||| |||| | ||||| || || || | || ||||| Sbjct 62657 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 62598 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| ||| | ||||| || ||| | || ||| Sbjct 62597 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAAC 62538 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || ||||||||||| ||| | |||| || | || Sbjct 62537 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGTCTT 62478 Query 243466 CTCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCATCACAGAAGCAGTTGAA 243522 || | |||||||| | ||| | || ||| ||||| | | || || ||||| Sbjct 62477 CTTCGCAACAAGCTCTC---CGAGTACCGTGTCCGTGAAATCGTTGCCGATGCCGTTGAC 62421 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | |||| ||||||| | ||||| ||| | || | ||| | || ||||| || Sbjct 62420 ATCGAACGGGAATTCGTCTGCGATGCTCTGCCGGTCGCCCTTGTCGGGATGAATGGCGAC 62361 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||| ||||| ||||| ||||| ||| | | ||||| ||||| || Sbjct 62360 CTCATGAGTCAGTATATCGAGTTCGTGGCCGATCGCCTGCTTGGGGCGCTAGGTTACGAC 62301 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || ||||| | |||||||| | || ||||||||||| ||||| || ||||| Sbjct 62300 AAGTTGTACGGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAG 62241 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 || ||||||||||| ||| | ||| | || ||||| | | ||| | |||||| Sbjct 62240 ACAAACTTCTTCGAGAAGAGGGTCGGCGACTATCAGAAGGCCTCG-GTGATG 62190 >seq83 Length=609517 Score = 134 bits (148), Expect = 3e-26 Identities = 293/436 (67%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| ||||| |||| | ||||| || || || | || ||||| Sbjct 416514 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 416573 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||| ||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 416574 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 416633 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 || ||||| |||||||||||||| ||| | |||| || | || Sbjct 416634 GAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGCCTC 416693 Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 |||| |||||||| | ||| ||||| |||| | | || || ||||| | | Sbjct 416694 CTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATC 416753 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACT 243584 ||| ||| ||| | |||||||| | ||| || || || | || |||||| ||| || Sbjct 416754 GAACGGGAGTTCGTCTGCGACGC-ACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCT 416812 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | || ||||| || | | || Sbjct 416813 CATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAA 416872 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 ||||| | |||||||| | || ||||||||||| ||||| || || || | Sbjct 416873 GATGTACCGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGC 416932 Query 243705 TAACTTCTTCGAAAAG 243720 ||||||||||| ||| Sbjct 416933 CAACTTCTTCGAGAAG 416948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102478477580250