Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq83 140 4e-28 seq1439 132 6e-26 seq202 132 6e-26 seq125 129 7e-25 seq215 107 2e-18 seq1456 100 3e-16 seq308 93.3 5e-14 >seq83 Length=609517 Score = 140 bits (154), Expect = 4e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| |||||||||||||| || |||||| || || |||||||| || Sbjct 416663 GTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 416604 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | |||||| || || || || || || ||||||||||| ||||| || || Sbjct 416603 GCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 416544 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| |||| ||| ||||| || ||||||| Sbjct 416543 GGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 416512 >seq1439 Length=74689 Score = 132 bits (146), Expect = 6e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||||||||||||||| || || || ||| || || |||||||| || Sbjct 62508 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCC 62567 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || ||||||||||| ||||| || || Sbjct 62568 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 62627 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||||| |||| ||| ||||| || || ||| Sbjct 62628 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 62658 >seq202 Length=395113 Score = 132 bits (146), Expect = 6e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||||||||||||||| || || |||||| || || Sbjct 244047 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 244106 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | |||||| || || || || || || ||||| ||||| Sbjct 244107 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 244166 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || || ||||| || | ||| ||||| || ||||||| Sbjct 244167 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGC 244209 >seq125 Length=520858 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 302553 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 302612 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | ||| || || || || || || || ||||||||||||||||| ||||| Sbjct 302613 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 302672 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || | | ||||| ||||| |||| Sbjct 302673 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 302703 >seq215 Length=379446 Score = 107 bits (118), Expect = 2e-18 Identities = 298/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| ||||| || || || | || || || || || |||||| ||||| || Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 ||||||| || || || | |||||||||||||| |||||||| || ||||||| Sbjct 310813 ATGACAATTATACCAGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGATTGAGA 310754 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 10967 || ||||| | ||||||||| | | | | | || | | | |||| |||| |||| Sbjct 310753 GTCTGTTCTCTTTCATCATTTCC--TCCTCCAATTCCTGTTCCTCTTTGCCTACCAACGG 310696 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGCAACTTCAAAGATA 11026 | || || ||||| | || || ||||| || ||| || || | ||| ||| | Sbjct 310695 CATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGG 310637 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACAT 11086 || || |||| ||||||||||| ||||||||||| ||||| | | | ||| || Sbjct 310636 TCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA-AT 310578 Query 11087 TG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 11145 || || || ||||| | |||||| || || || ||| || | ||||| || || Sbjct 310577 TGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCAGT 310518 Query 11146 CCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGCG 11205 || || ||| |||||| |||| || || | ||| || | || | | | Sbjct 310517 TCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAATCT 310458 Query 11206 CTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 ||| || | ||| ||||| || || | ||| Sbjct 310457 CTCGGGCTTTTTCAGGAACTCAACTACTTC 310428 >seq1456 Length=73808 Score = 100 bits (110), Expect = 3e-16 Identities = 190/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| |||||||| ||||||||||| || || | ||||| || | | | Sbjct 65686 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 65745 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | || || | | ||| | || || || ||||||||||||||||| || || | Sbjct 65746 CCAAGC--CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 65803 Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||||| || | || || || | ||| ||||| ||| || || ||||||| Sbjct 65804 ACGGTGCCTTAGCCTTCGCTTTCTCGAACAAATCCCGGACCCTCGACGCCCCCACACCCA 65863 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 | |||| ||||| || | || || | || || |||||| ||| || || |||| Sbjct 65864 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 65923 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | | |||||||| | || || || || || || ||| Sbjct 65924 CCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGT 65961 >seq308 Length=314964 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| |||||||| |||||||| || || || | |||||||| | | | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | || || | | ||| | || || || |||||||||||||||||||| || | Sbjct 202605 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 202662 Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||||| || | || ||||| | ||| ||||| ||| || || || |||| Sbjct 202663 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 202722 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||| | ||||| || | || || | ||| || ||| ||||| || || || | Sbjct 202723 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 202782 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | || | || || || ||||| || || || || Sbjct 202783 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 202819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597141427468200