Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1710 127 2e-24 seq540 111 2e-19 seq403 109 6e-19 seq193 109 6e-19 seq33 107 2e-18 seq1190 104 3e-17 seq158 96.9 4e-15 seq16 95.1 1e-14 seq299 89.7 6e-13 >seq1710 Length=60682 Score = 127 bits (140), Expect = 2e-24 Identities = 148/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || |||| || || |||| || ||||||||||||||||| Sbjct 22903 CTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 22844 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | || |||||||||| || |||| | | | ||| Sbjct 22843 GATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGGATTTTGGCCTTAACGT 22785 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||| || |||| |||||||| ||||| || || |||| Sbjct 22784 TGTCGATCGTGTCCGAGCT---TTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCT 22728 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 22727 TCACAAAGATCTGCAT 22712 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || |||| || || |||| || ||||||||||||||||| Sbjct 22675 CTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 22616 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | | ||||||||| ||| || |||| | Sbjct 22615 GATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 22556 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| |||||||| || | |||||||| ||||| || || || || || Sbjct 22555 GTCGATGGTGTCGGAGGATTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 22496 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 22495 GAAGATCTGCAT 22484 >seq540 Length=201599 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || ||||| ||| |||| || |||||||| || || || Sbjct 110022 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAA 110081 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 110082 GATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 110140 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 110141 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCA 110200 Query 42196 CAAAGATTTGCATTTTCACGCCG 42218 | ||||| ||||| ||| || || Sbjct 110201 CGAAGATCTGCATCTTCCCGGCG 110223 >seq403 Length=254866 Score = 109 bits (120), Expect = 6e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || |||| || |||||||| || ||||| Sbjct 86262 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 86203 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 86202 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 86144 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| ||||| || | ||||| || || ||||| | |||||| | Sbjct 86143 TGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAACGTCTTCA 86084 Query 42196 CAAAGATTTGCATTTTCAC 42214 | ||||| ||||| |||| Sbjct 86083 CGAAGATCTGCATACTCAC 86065 >seq193 Length=408959 Score = 109 bits (120), Expect = 6e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | |||| ||||| ||| | || |||||| || || ||||||||||| Sbjct 265341 CCTCCCCTGAGTCGCAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 265282 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| || ||||| || |||| |||||||| | || Sbjct 265281 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATAAGTCTTTGCTGGTCCGGAGGG 265222 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | || |||||||||| ||| | || | | ||| | | | ||||| ||| || Sbjct 265221 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCTGAACTC---TC 265166 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | ||| ||||| || || || || ||||| || ||||| ||||| Sbjct 265165 CACCTCCAACGTTATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 265115 >seq33 Length=860167 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 78801 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 78742 Query 42077 TATGAGTCGCTGCTGGT-CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 ||||| |||||||||| |||| || | || ||||||||| ||| || |||| Sbjct 78741 GATGAGGCGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACGT 78683 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 78682 TATCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTAAGGGTCTTCA 78623 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 78622 CGAAGATCTGCATCTT 78607 >seq1190 Length=94153 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| ||||| || || | || || |||||||| || || || Sbjct 59601 CTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 59660 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| | ||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 59661 GATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 59719 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| |||| |||||||| || || || | |||| Sbjct 59720 TGTCGATGGTGTCCGAGCTC---TCCACCTCGAGGGTGATGGTCTTCCCGGTCAAAGTCT 59776 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 59777 TGACGAAGATTTGCAT 59792 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||||| || || | || || |||||||| || || || Sbjct 39755 CTCCTTCTGTATATTGTAATCAGCCAAGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAA 39696 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | || | || |||||| ||| ||| | || | | | | | Sbjct 39695 GATGAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCC-TGAATCTTAGCCTTAACAT 39637 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || |||| ||||| |||| ||||| || ||||| || | |||| Sbjct 39636 TGTCAATGGTATCAGAGCTC---TCCACCTCGAGGGTGATTGTCTTGCCAGTCAAGGTCT 39580 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 39579 TGACAAAGATTTGCAT 39564 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| ||||| || || | || || |||||||| || || || Sbjct 39983 CTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 39924 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| | |||||||| | || | | |||||||||| ||| | || | |||| Sbjct 39923 GATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCTTAGCCTTGACAT 39865 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| |||| ||||| || ||||| || | |||| Sbjct 39864 TGTCAATGGTGTCAGAGCTC---TCCACCTCGAGGGTGATTGTCTTGCCAGTCAAGGTCT 39808 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 39807 TGACAAAGATTTGCAT 39792 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| ||||| || || | || || |||||||| || || || Sbjct 59290 CTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 59349 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| | |||||||| | || | | |||||||||| ||| | || | |||| Sbjct 59350 GATGAGCCTTTGCTGGTCCGGCGGAATACCCTCCTTGTCC-TGAATCTTAGCCTTGACAT 59408 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| |||| ||||| || ||||| || | |||| Sbjct 59409 TGTCAATGGTGTCAGAGCTC---TCCACCTCGAGGGTGATTGTCTTGCCAGTCAAGGTCT 59465 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 59466 TGACAAAGATTTGCAT 59481 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||||||||||| || || | || || |||||||| || || || Sbjct 59829 CTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 59888 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||| ||| ||| | || | |||| Sbjct 59889 GATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTATCC-TGAATCTTAGCCTTGACAT 59947 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| ||||| |||| |||||||| || || || || || | Sbjct 59948 TGTCGATGGTGTCAGAACTC---TCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTT 60004 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 60005 TGACGAAGATCTGCAT 60020 >seq158 Length=464608 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || | || | | ||||| Sbjct 36054 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGATCTCC----CCGCGAA 36109 Query 42077 TATGAGTCGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 ||||| ||| ||||||| |||||| | || ||||| ||| ||| || || | || Sbjct 36110 GATGAGACGCGGCTGGTCCGGCTGG-ATGCCCTCCTCCTCCTGGATCTTGGCCTTCA-CG 36167 Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| Sbjct 36168 TTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTC 36227 Query 42195 ACAAAGATTTGCATTTT 42211 |||||||||||||| || Sbjct 36228 ACAAAGATTTGCATCTT 36244 >seq16 Length=1017178 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || |||| || |||||||| || ||||| Sbjct 913254 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 913313 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||| ||| ||| || || | ||| Sbjct 913314 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 913372 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| || || || | ||||| || || ||||| || ||||| | Sbjct 913373 TGTCGATGGTGTCCGACGACTCGACCTCTAGGGTGATCGTCTTCCCCGTGAGAGTCTTCA 913432 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 913433 CGAAGATCTGCATCTT 913448 >seq299 Length=319228 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || |||| || || | || || ||||| || |||||||| Sbjct 260998 CTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAA 260939 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||| || | || | || ||||||||| ||| || |||| | Sbjct 260938 GATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 260879 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | |||||||| || || || || || || || Sbjct 260878 GTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTGAC 260819 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 260818 AAAGATTTGCAT 260807 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| ||||| || || || | || || || ||||| ||||| || Sbjct 260770 CTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 260711 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| | | |||||||| | || | | |||||| ||| ||| || ||||| | Sbjct 260710 TATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATT 260651 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || || || || || || Sbjct 260650 GTCAATTGTGTCAGAGGATTCAACCTCAAGGGTGATTGTCTTTCCGGTGAGAGTTTTGAC 260591 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 260590 AAAGATTTGCAT 260579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543019857603600