Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1530 111 1e-19 seq299 86.0 4e-12 >seq1530 Length=69702 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || || | ||| || | || |||||||||||||| || || || || ||||| || ||| Sbjct 26093 CCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT 26152 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | || ||||||||||| ||||| ||||||| | || ||||| || Sbjct 26153 -AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGG 26211 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || || ||||| ||| ||| |||||| | || || || || | ||| || Sbjct 26212 AATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGAC 26271 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 26272 CTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCAT 26319 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| |||||||||||||| || || || || ||||| || ||| || | | | || | Sbjct 25198 AACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCT-AGGGTGCGACCATCCT 25256 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 |||||||||| ||||| ||||||| | || ||||| ||||| || || ||||| Sbjct 25257 CTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCTT 25316 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| |||||| | || || || || | ||| || || | ||| || || | Sbjct 25317 GAATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATAGTCT 25376 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| |||| ||||||||||| Sbjct 25377 TGCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || | | | || |||||||| Sbjct 24977 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCT-AGGGTGCGACCATCCTCTAATTG 25035 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | ||||| | || || || ||||| || || ||||| |||||| Sbjct 25036 TTTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTGTCTTGAATTTT 25095 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || ||||||||| | ||| || || | ||| ||||| || || || Sbjct 25096 AGCTTTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 25155 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||||||||| Sbjct 25156 GAGAGTCTTAACGAAAATTTGCAT 25179 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 ||| ||||||||||| || || ||||| ||||| || || ||| || | | |||| | Sbjct 25426 AACCAAATGAAGGGTCGATTCCTTTTGAATGTTATAGTCTGCT-AGGGTGCGACCGTCCT 25484 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||| || || ||||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 25485 CTAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTT 25544 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||| |||||| | || || || || | ||| || || | ||| ||||| | Sbjct 25545 GAATCTTGGCCTTTACATTATCAATTGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCT 25604 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || || || || | ||||||||||| Sbjct 25605 TACCGGTGAGGGTCTTGATGAAAATTTGCAT 25635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||||||||| || || ||||| ||||| || || ||| || | | |||| || Sbjct 25655 ACCAAATGAAGGGTCGATTCCTTTTGGATGTTATAGTCTGCT-AGGGTGCGACCGTCCTC 25713 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || ||||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 25714 TAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 25773 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| |||||| | || || || || | ||| || || | ||| ||||| || Sbjct 25774 AATCTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTT 25833 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || | ||||||||||| Sbjct 25834 ACCGGTGAGGGTCTTGATGAAAATTTGCAT 25863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||||||||| ||||| || |||| || || || | | |||| || Sbjct 26339 ACCAAATGAAGGGTAGATTCTTTCTGGATGTCATAGTCTGCCAGGGTACGACCGTCCTCC 26398 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | ||||| | ||| ||||| || || || |||||||| | Sbjct 26399 AACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 26458 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||||||| | || || || || | ||| || || | ||| ||||| ||| Sbjct 26459 ATCTTGGCTTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATGGTCTTA 26518 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| || ||||| Sbjct 26519 CCGGTGAGAGTCTTAACAAATATCTGCAT 26547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||||||||| || || ||||| ||||| || || ||| || | | |||| || Sbjct 25883 ACCAAATGAAGGGTCGATTCCTTTTGGATGTTATAGTCTGCT-AGGGTGCGACCGTCCTC 25941 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || ||||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 25942 TAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 26001 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || |||| | | | || || || | ||| || || | ||| ||||| || Sbjct 26002 AATCTTAGCCTTTATATTATTAATGGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTT 26061 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||| || | ||||||||||| Sbjct 26062 ACCGGTGAGAGTCTTAATGAAAATTTGCAT 26091 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||| || || || | | | | || || ||||| Sbjct 262605 TGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCCAATTGC 262546 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 |||||||| | |||| | ||||||||| ||| ||||| |||||||| || ||| Sbjct 262545 TTGCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGTATCTTT 262486 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || |||||||| | || || || | || ||||| || || || Sbjct 262485 GCCTTC-ACATTGTCGATAGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCGGT 262427 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||||||||| Sbjct 262426 GAGGGTTTTCACAAAAATTTGCAT 262403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357268232358275