Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq83 150 2e-31 seq202 143 3e-29 seq1439 141 1e-28 seq125 140 4e-28 seq1456 93.3 5e-14 seq308 86.0 8e-12 seq32 84.2 3e-11 >seq83 Length=609517 Score = 150 bits (166), Expect = 2e-31 Identities = 247/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 127342 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 127401 ||| || || || | ||| |||| ||||||| ||| ||| |||||| |||| Sbjct 416852 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 416793 Query 127402 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 ||| | ||| ||||| ||||| ||| |||| || || ||||| ||||| ||| | Sbjct 416792 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGTTCGATGTCAACAGCGTCCGCAA 416734 Query 127461 CGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAA-AGTCTTGAAGAGTTCCAC 127518 |||| || | | | ||| | ||| | | ||||| | || || | |||| Sbjct 416733 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 416676 Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 || || || |||||| |||||||| |||||||||||||| || |||||| || || Sbjct 416675 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 416616 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || || ||||| | |||||| || || || || ||||| ||||||||||| Sbjct 416615 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGAT 416556 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686 ||||| || || ||||| |||| || |||||||| ||||||| ||| Sbjct 416555 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGA 416508 >seq202 Length=395113 Score = 143 bits (158), Expect = 3e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || |||||||||||||||||||| || || |||||| ||||| Sbjct 244046 AGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 244105 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || |||||||| | |||||| || || || || ||||| ||||| ||||| Sbjct 244106 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGAT 244165 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC 127682 ||||| || || ||||| || | || |||||||| ||||||| Sbjct 244166 GCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGC 244209 >seq1439 Length=74689 Score = 141 bits (156), Expect = 1e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||||||||||||||| || || || ||| ||||| |||||||| || Sbjct 62508 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCC 62567 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 62568 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 62627 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| |||| || |||||||| || ||| Sbjct 62628 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 62658 >seq125 Length=520858 Score = 140 bits (154), Expect = 4e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 302553 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 302612 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | ||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct 302613 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 302672 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686 ||||| || | | ||||||||||| |||| ||| Sbjct 302673 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA 302707 >seq1456 Length=73808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| ||||||||||| |||||||| ||||||||||| || || | ||||| || | | Sbjct 65685 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 65744 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | || | || || | | ||| | || || || |||||||| || ||||| || || Sbjct 65745 GCCAAGC--CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATG 65802 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||||| || | || || || | ||| || || ||| || || |||||| Sbjct 65803 CACGGTGCCTTAGCCTTCGCTTTCTCGAACAAATCCCGGACCCTCGACGCCCCCACACCC 65862 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || |||| |||||| || | || || | || || |||||| ||| || || ||| Sbjct 65863 ACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCC 65922 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | |||||||| | || || || || || || ||| Sbjct 65923 GCCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGT 65961 >seq308 Length=314964 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| ||||||||||| |||||||| |||||||| || || || | |||||||| | | Sbjct 202544 GAACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACC 202603 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | || | || || | | ||| | || || || |||||||| || |||||||| || Sbjct 202604 GCCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATG 202661 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||||| || | || ||||| | ||| || || ||| || || || ||| Sbjct 202662 CACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCC 202721 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||| | |||||| || | || || | ||| || ||| ||||| || || || Sbjct 202722 ACAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCT 202781 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | || || || ||||| || || || || Sbjct 202782 GCCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 202819 >seq32 Length=867475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 177697 CCCATCCTTGATCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTA 177756 |||||| | || ||||| ||||||| |||| ||||||| || | |||||| ||||| Sbjct 279936 CCCATCGGCGGTCTCGATGATGAACTCCGCGGAGAAGATGTTGGTGAGCTTGGCGCCGTA 279877 Query 177757 GCCATTGCGTCCACCAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAG 177813 |||||| || |||| | | ||||||| |||||| |||||||| | || ||||| Sbjct 279876 GCCATTTCGCCCAC---CCGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTGGTGAG 279820 Query 177814 AAGGTGACCAAAG 177826 ||||| || ||| Sbjct 279819 GAGGTGGCCGAAG 279807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613289289911400