Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq202 127 3e-24 seq1439 114 2e-20 seq125 105 1e-17 seq83 105 1e-17 >seq202 Length=395113 Score = 127 bits (140), Expect = 3e-24 Identities = 291/432 (67%), Gaps = 11/432 (3%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||||||||| |||| || || || |||||| | |||| ||||| Sbjct 243774 TTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTCCATCCAGTCGAAAGGGTTG 243833 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 || || ||| | || || ||| | |||| | ||| || | ||| ||| Sbjct 243834 GAGACCCCGTACATCTTGCCGTAGCCCAGCGCCCCGAGCAGGCGGTCGGCGATAAACTCG 243893 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 ||||| | |||| | ||| || ||||| | ||| ||||| || || || | Sbjct 243894 ATGTACTGGCTCATCAGGACACCATTCATCCCGACGAGCGCGACGGGCAGGGCGTCGCAG 243953 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCC 159889 | |||||| ||| || || || || |||| || || | ||| | || | | Sbjct 243954 ACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGATAGCCCGGACC---TTGTCCTCG 244010 Query 159890 G---GCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | ||||| | | || || |||| ||||||| |||||||||||||| || ||| Sbjct 244011 GAGAGCTTGTTGCGGAGGAGG-CCGTAAA--GGAGGCAAGCAAAGTCGCAGTGAAGGCCC 244067 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| || ||||||| ||||||||| | | |||| || ||||||| || ||| ||| Sbjct 244068 TCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGGCCGCGCTTCTTG 244127 Query 160007 AGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| |||| ||| | ||| |||||||| ||||| ||| || || || Sbjct 244128 AGCCAGAAGATGG-CGCAGAAGGAGCCGGAGAAAAAGATGCCCTCGACGCAGGCGAAGGC 244186 Query 160066 CACGAGCCTCTC 160077 ||||| | ||| Sbjct 244187 GACGAGTCGCTC 244198 >seq1439 Length=74689 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| |||||| || | | Sbjct 62488 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAG 62547 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 |||| |||||||||| || ||| |||||||| || |||| |||| ||| | ||| Sbjct 62548 GTGAGACCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 62606 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||| ||||| ||| || || || ||||| | ||| Sbjct 62607 GAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 62648 >seq125 Length=520858 Score = 105 bits (116), Expect = 1e-17 Identities = 529/837 (63%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||| ||||| ||||| ||||| |||| || || || ||||| | |||| |||| Sbjct 302266 TCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGT 302325 Query 159708 TCTTCACGTGATAGCGCTT--CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 | ||| | | ||| || | || || | | | |||| | ||| ||||| || Sbjct 302326 TGACCACCCCAAACATCTTATCGTGA--CCCAGTGACTCGAGCAGGCGGTCGGCCACGAA 302383 Query 159766 TTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTC 159825 || ||||| | ||| | || | ||| ||||| | || ||||| || || || Sbjct 302384 CTCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCAACGAGGGCTACGGGAAGGGCGTC 302443 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 | | ||||||| ||| || || || || |||| || || | |||||| || | Sbjct 302444 ACAAACAAACTCCCGCTCGATGTCAACAGCGTCGGCAACGATGGCCCGGACACGGTCCTC 302503 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | | ||||| | | || | | |||||||| || |||||||| || || || Sbjct 302504 CGACAGCTTGTTGCGGAGGAGGCTGT---AGAGGAGGCAAGCGAAGTCGCAATGAAGGCC 302560 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||| | |||||| || | | |||| |||||||||| || ||| || Sbjct 302561 CTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTT 302620 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||||||| || | |||| ||| | || || ||||| ||||| || || || | Sbjct 302621 GAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGG 302679 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | || | | ||| |||| ||| || | ||| |||| | |||||| || | Sbjct 302680 CGACAATTCGCTCGGCAAACGAGCCGGAAGATTCA---ATCCAGCGCAGGGCCCAGTCGG 302736 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 |||| | || | || | |||| ||| || | | | || ||| | Sbjct 302737 CCTTTCGGGAGACAGAGGGGACCGTGTCGATGGCACGGAAGAGACGGGTCTTCTCGTCAG 302796 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 |||||||| || | | || |||||||| || | ||| | || ||||||| Sbjct 302797 GGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGG 302856 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTT 160304 | ||||| ||| |||||| ||||| | ||| || || | |||||| Sbjct 302857 CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGG 302916 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| || || | ||||| | ||| || |||||||| | ||||| |||| Sbjct 302917 CGGCGAGATTCTCAAGGACGATGCCGTCTGAGGCGGCGAAGAAAGCAAGAACGTGGGAGA 302976 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAAT 160424 |||| || | |||||| | | ||| | | | ||| || | ||||| | | || || Sbjct 302977 TGAAGTGGCGCTCGTCGTGGGAGAGGCGATGCTGCCAATGGGGGACGTCCGGCGACAGAT 303036 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATgg 160481 | ||||| ||||| ||||| || ||| || | ||||| | ||||||||| Sbjct 303037 CCACCTCCTCCGCCGTCCAAAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGG 303093 >seq83 Length=609517 Score = 105 bits (116), Expect = 1e-17 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| |||||||| | | Sbjct 416683 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAG 416624 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 ||||||| ||||||| || || |||||||| || || | |||| ||| | ||| Sbjct 416623 GTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAGCCGGA 416565 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||||| ||||| ||| || || || ||||| | ||| | || ||| || Sbjct 416564 GAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCG 416510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794872770812400