Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7364 82.4 5e-11 seq388 82.4 5e-11 seq267 82.4 5e-11 >seq7364 Length=1738 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||| || | |||| ||| || || || | ||||| | Sbjct 344 GCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCTTC 285 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| || | ||||||||| |||| || | | |||||||||||| | Sbjct 284 CAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGATGA 225 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || |||||| || ||| ||||| | || | ||||||| ||| ||||| Sbjct 224 GAACCCCTCCTTGTCGTGGATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCCAC 165 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || | ||||| || || || ||||| Sbjct 164 CTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 117 >seq388 Length=261907 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || ||||||||| |||| |||| || | || || ||| ||||| Sbjct 215726 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAA 215667 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||||| || | || || ||||| ||| || || | ||| Sbjct 215666 ATGAGCCTTTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGTATCTTGGCCTTCA-CGTT 215608 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | || || | ||| ||||| |||||||| || || || ||||| | || || || Sbjct 215607 GTCGATGGTATCCGAGCTCTCCACCTCCAAAGTGATAGTCTTCCCCGTGAGCGTCTTGAC 215548 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 215547 GAAGATCTGCAT 215536 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || ||||||||| |||| |||| || | || || ||| ||||| Sbjct 215954 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAA 215895 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||||||| || | || || ||||| ||| || || | ||| Sbjct 215894 ATGAGCCTTTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGTATCTTGGCCTTCA-CGTT 215836 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | || || | ||| ||||| |||||||| || || || ||||| | || || || Sbjct 215835 GTCGATGGTATCCGAGCTCTCCACCTCCAAAGTGATAGTCTTCCCCGTGAGCGTCTTGAC 215776 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 215775 GAAGATCTGCAT 215764 >seq267 Length=345500 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || |||| || | |||| ||| || || || | ||||| | Sbjct 56361 GCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAATCTTC 56420 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| || | ||||||||| |||| || | | |||||||||||| | Sbjct 56421 CAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGATGA 56480 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || |||||| || ||| ||||| | || | ||||||| ||| ||||| Sbjct 56481 GAACCCCTCCTTGTCGTGGATCTTTGCTTTAAGGTTGGCGATCGTGTCTGAGCTCTCCAC 56540 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || | ||||| || || || ||||| Sbjct 56541 CTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 56588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347249303193695