Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq125 165 1e-35 seq202 159 4e-34 seq2275 152 6e-32 seq1439 149 8e-31 seq83 145 9e-30 seq215 131 2e-25 seq308 105 8e-18 seq1456 87.8 2e-12 >seq125 Length=520858 Score = 165 bits (182), Expect = 1e-35 Identities = 126/149 (85%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| ||| Sbjct 302701 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 302642 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 302641 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 302582 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||||||||||| ||||||||||| || || Sbjct 302581 GAGCTTATCTCCCGTGACGAGGGCCTTCA 302553 >seq202 Length=395113 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || ||| Sbjct 244207 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 244148 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 244147 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 244088 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 244087 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 244047 >seq2275 Length=40372 Score = 152 bits (168), Expect = 6e-32 Identities = 271/388 (70%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || ||||| | || ||| || || || |||| || ||||| ||| Sbjct 23142 TCAAATCGCCCAGGCCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 23201 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| |||||||| | | ||||| ||||||||||| ||||||||||| |||| | Sbjct 23202 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 23261 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 23262 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 23319 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 16124 ||||||||||||||| || || ||||| || ||| || | | ||| ||| ||| Sbjct 23320 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 23378 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || || || || |||||||||||||| || ||||| | | | ||| || Sbjct 23379 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCTGAA-AT 23437 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 23438 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 23497 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| ||| | || ||| ||||| Sbjct 23498 TCCTGGAGGACCAACAAGAAGGACACCT 23525 >seq1439 Length=74689 Score = 149 bits (164), Expect = 8e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | || || || || || ||||| ||||||||||| || ||| Sbjct 62657 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 62598 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||||||||||| |||||||| |||||| ||| || ||| Sbjct 62597 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAAC 62538 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| ||||||||||| |||||| Sbjct 62537 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 62508 >seq83 Length=609517 Score = 145 bits (160), Expect = 9e-30 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||| Sbjct 416514 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 416573 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||||||||| | ||||||||||| || || |||||||| || ||| |||||||||| Sbjct 416574 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 416633 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || |||||||| |||||| Sbjct 416634 GAACTCATCTCCCGCGACGAGGGCCTCCAC 416663 >seq215 Length=379446 Score = 131 bits (144), Expect = 2e-25 Identities = 302/446 (68%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| ||||| || ||||| | || ||| || || || |||| || || || || Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 ||||||| ||||| || ||| || |||| |||||||| || ||||||||||| || | Sbjct 310813 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 310756 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 16063 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 310755 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 310698 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGA 16122 |||||| |||||||||| || || || || || ||| || | | ||| ||| | Sbjct 310697 GGCATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 310639 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 310638 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 310580 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 |||| || || |||||| | |||||| ||||| || ||| || | |||||| || Sbjct 310579 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCA 310520 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 16301 || ||||| ||| || ||| ||||| ||||| ||| || | || | || Sbjct 310519 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 310460 Query 16302 CTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||||| || | || || || || || Sbjct 310459 CTCTCGGGCTTTTTCAGGAACTCAAC 310434 >seq308 Length=314964 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 || ||||||||||| ||||| ||||| || ||||| || |||| |||||||| | | | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 202605 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 202662 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 | ||| || | || ||||| |||||||| || | | || ||||| || | Sbjct 202663 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 202722 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 202723 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 202782 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 | | || | || || || ||||| || ||||| ||| |||| | | || |||| Sbjct 202783 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAAAGACAACCTT 202842 Query 16273 GTGGAATCTTGGCGCC 16288 |||||||| || || Sbjct 202843 TAGGAATCTTCGCCCC 202858 >seq1456 Length=73808 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 || ||||||||||||||||| ||||| || || || || |||| ||||| || | | | Sbjct 65686 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 65745 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | || || | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 65746 CCAAGC--CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 65803 Query 16093 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | ||| || ||||| | || || | |||||| || | | || |||||| Sbjct 65804 ACGGTGCCTTAGCCTTCGCTTTC----TCGAACAAATCCCGGACCCTCGACGCCCCCACA 65859 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || || |||| |||||| || | | || | || || |||||| || | || Sbjct 65860 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 65919 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 ||||| | |||||||| | || || || || || || || ||| | | |||| | Sbjct 65920 CCCGCCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 65979 Query 16269 CCTCGTGGAATCTTGGCGCC 16288 ||| || ||||| || || Sbjct 65980 CCTTTGGGGATCTTCGCCCC 65999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620521920058800