Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq202 113 5e-20 seq125 107 2e-18 seq83 104 3e-17 seq1475 93.3 5e-14 seq1439 93.3 5e-14 seq1456 86.0 7e-12 >seq202 Length=395113 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || || ||||||||||| || |||| || || |||||||| || Sbjct 244059 TGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGGCCG 244118 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || || ||||||||||| || ||| Sbjct 244119 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCTCGACGCAG 244178 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| |||| || ||||| || || | | ||| || | ||| | ||| |||||| Sbjct 244179 GCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCAGAAGACTCAATCCATTGGAGGGCCCAG 244238 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 | |||||| || | | |||||| | | |||||| | ||| || Sbjct 244239 TCGGCCTTCCGGGCGACCGCGGGGACGTTGTCGATGGCGTGGAAGAG 244285 >seq125 Length=520858 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||| || || || || ||||| ||||| || |||| || || |||||||| || Sbjct 302552 ATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 302611 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||||| ||||||||||| || || || ||||| |||||||| ||||| ||||| Sbjct 302612 GCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACA 302671 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||| |||| | ||||| ||||| | | || || | ||| || ||||| Sbjct 302672 GGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCAATCCAGCGCAGGGCCCA 302731 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || | ||||||| || | |||||| Sbjct 302732 GTCGGCCTTTCGGGAGACAGAGGGGACCGTGTCGATGGC 302770 >seq83 Length=609517 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || |||||||| || || |||| || || |||||||| || Sbjct 416662 TGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 416603 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||| || || || || || |||||||||||||| || ||| Sbjct 416602 CGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAG 416543 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| || | || ||||| || || | | || |||| ||| || |||||| Sbjct 416542 GCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATCGATCCAGCGAAGGGCCCAG 416483 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 | |||||| || | | | |||||| || | |||||| | ||| || Sbjct 416482 TCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 416436 >seq1475 Length=72375 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || || ||||||||||||||||| || ||||| || || Sbjct 31411 GTAGATGTTGGATGTGTATGGCTCAAAACACTCATTGTTGCCAAGAATTTGACTGGTTGA 31352 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTC 109857 ||| |||||||| ||||| || |||||| ||||| || ||| ||| Sbjct 31351 AGCAGTGGGCATAGGAGCAATAAGAAGAGAGTTTCTGACACCATTC 31306 >seq1439 Length=74689 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||| || || |||||||| ||| Sbjct 62509 TGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCCT 62568 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 62569 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAG 62628 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | || ||||| || || Sbjct 62629 GCGAAGGCAACGAGGCGCTCGGCGAA 62654 >seq1456 Length=73808 Score = 86.0 bits (94), Expect = 7e-12 Identities = 248/379 (65%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||| ||||| | ||||| ||||| ||||| || | |||||||||| | Sbjct 65685 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 65744 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 || | | || ||| | || | | || || || ||||| ||||||||||| || || | Sbjct 65745 GCCAAGC-CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 65803 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 ||||| || || || | ||||| | || || || | | ||| || ||||| | Sbjct 65804 ACGGTGCCTTAGCCTTCGCTTTCTCGAACAAATCCCGGACCCTCGACGCCCCCACACCCA 65863 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 |||||| ||| ||||| | | || | ||| | |||||| || | ||| || | Sbjct 65864 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 65923 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 | | ||||| || | || || || || || || |||| || | | ||| || Sbjct 65924 CCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAACCTT 65983 Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950 ||||||||| || || | ||| || || ||||| ||||||||||| | | Sbjct 65984 TGGGGATCTTCGCCCCCAGAGCCGTGTACTTGTCCGGGTTCTTCAGGAAGTCCACCACTT 66043 Query 11951 CCTCAAGTTCCTCCTTGGC 11969 ||| || || |||||| Sbjct 66044 CCTGCAGCTCGAGCTTGGC 66062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588766803087000