Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq215 149 7e-31 seq83 145 9e-30 seq2275 143 3e-29 seq1439 129 7e-25 seq202 123 3e-23 seq125 123 3e-23 seq308 102 1e-16 seq1456 84.2 3e-11 >seq215 Length=379446 Score = 149 bits (164), Expect = 7e-31 Identities = 257/367 (70%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| ||||| || ||||| | || ||| || || || |||| || ||||| || Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 9255 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 ||||||| ||||| || ||| || |||| |||||||| || |||||||| || || | Sbjct 310813 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 310756 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9370 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 310755 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 310698 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||| |||||||||| || |||||||| || ||| || ||| | | || || Sbjct 310697 GGCATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAAAG 310638 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || ||||| | | || || |||||||||||||| || ||||| | | | ||| | Sbjct 310637 GTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA-A 310579 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 ||| || || |||||| | |||||| ||||| || ||| || | |||||| || | Sbjct 310578 TTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCAG 310519 Query 9550 TACCTGG 9556 | ||||| Sbjct 310518 TTCCTGG 310512 >seq83 Length=609517 Score = 145 bits (160), Expect = 9e-30 Identities = 241/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| || || || | ||| |||| ||||||| | ||| ||| |||||| |||| Sbjct 416852 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 416793 Query 117156 GAGATT-ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 |||| ||| ||||||||||| ||| |||| | || || ||||| || || | Sbjct 416792 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGTTCGATGTCAACAGCGTCCGCAA 416734 Query 117215 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACG 117273 |||| || ||| | ||| | | | || || | || || | |||| | Sbjct 416733 CGATTGCCCGGACCGCTTCCTCGGACAGCTTGTTGCGGAGGAGGCT-GTAGAGGAGGCAG 416675 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || || |||||| ||||| || ||||| || ||||| || |||||| ||||| Sbjct 416674 GCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 416615 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || || ||||| | ||| | ||||||||||| || |||||||||||||| Sbjct 416614 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGATG 416555 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||||| || || || || |||| ||||||||||||||||||| Sbjct 416554 CCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 416512 >seq2275 Length=40372 Score = 143 bits (158), Expect = 3e-29 Identities = 266/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || ||||| | || ||| || || || |||| || || || ||| Sbjct 23142 TCAAATCGCCCAGGCCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 23201 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| |||||||| | ||||| ||||||||||| |||||||| || |||| | Sbjct 23202 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 23261 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9372 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 23262 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 23319 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||||||||||| || ||||| || || ||| || ||| | | || |||| Sbjct 23320 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGAT 23379 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | || || |||||||||||||| || ||||| | | | ||| ||| Sbjct 23380 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCTGAA-ATT 23438 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 23439 GAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGTT 23498 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACC 9577 ||||| ||| | || ||| |||| Sbjct 23499 CCTGGAGGACCAACAAGAAGGACACC 23524 >seq1439 Length=74689 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || ||||| ||| || || |||||||| || Sbjct 62508 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCC 62567 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || |||||||||||||| ||||| || || Sbjct 62568 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 62627 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || |||| |||||||||||||| ||| Sbjct 62628 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 62658 >seq202 Length=395113 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||| || ||||| || || || || |||||| || || Sbjct 244047 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 244106 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || |||||||| || |||||||| ||||| Sbjct 244107 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 244166 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || || || || || | || |||||||||||||||| ||| | |||| | Sbjct 244167 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCAGA---AGACTCAATC 244223 Query 117454 CATTTCATTGCCCATTTCGCCTTC 117477 |||| | ||||| | |||||| Sbjct 244224 CATTGGAGGGCCCAGTCGGCCTTC 244247 >seq125 Length=520858 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || ||||| || ||||| ||||| || || |||||| || || |||||||| || Sbjct 302553 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 302612 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||| | |||| | ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 302613 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 302672 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | || |||||||| || |||| Sbjct 302673 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 302703 >seq308 Length=314964 Score = 102 bits (112), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||| ||||| || || || ||||| || |||| |||||||| | | | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| ||||| | Sbjct 202605 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 202662 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| || | || | ||||| ||||| || ||||| || ||||| || | Sbjct 202663 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 202722 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 202723 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 202782 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCC 9563 | | || | || || || ||||| || ||||| ||| |||| Sbjct 202783 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCC 202826 >seq1456 Length=73808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||||||||| || || || || || || |||| ||||| || | | | Sbjct 65686 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 65745 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | || || | | ||| ||||||| |||||||| ||||| ||||| ||||| | Sbjct 65746 CCAAGC--CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 65803 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| || | || | || || | ||| || ||||| || |||||||| | Sbjct 65804 ACGGTGCCTTAGCCTTCGCTTTCTCGAACAAATCCCGGACCCTCGACGCCCCCACACCCA 65863 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | |||| |||||| || | | || | || || |||||| || | || |||| Sbjct 65864 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 65923 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | |||||||| | || || || || || || || Sbjct 65924 CCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGG 65960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589771246194600