Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1475 105 8e-18 seq262 104 3e-17 >seq1475 Length=72375 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| || | || |||| |||||| ||||||||| Sbjct 28486 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACCA 28427 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || |||||||| || | |||| || || || ||| Sbjct 28426 TTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGAA 28367 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || ||||| ||||||| ||||| |||||||| || Sbjct 28366 ACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATATC 28307 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||| ||| |||| Sbjct 28306 CCCTCAATGCTATCTTCTTTCAT 28284 >seq262 Length=346991 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||||||||| | ||| | ||||||| || | || |||| ||| || |||||||| Sbjct 236562 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 236621 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| || || ||||||||||| | || | || || || || Sbjct 236622 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 236681 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || || || || || || || ||||| ||||||| || || |||||||| || Sbjct 236682 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 236741 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||| || || ||||| ||| |||| || || |||||||| Sbjct 236742 TCCCTCAATGCTATCTTCTTTCATGCATACGAGGAAACAACT 236783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561909145980600