Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1439 242 7e-59 seq83 223 6e-53 seq125 205 2e-47 seq202 185 2e-41 >seq1439 Length=74689 Score = 242 bits (268), Expect = 7e-59 Identities = 564/842 (67%), Gaps = 19/842 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| ||||| || || || ||||| ||||||||||||||||||| || ||||||| ||| Sbjct 62205 CTGATAGTCGCCGACCCTCTTCTCGAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTC 62264 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCA 47957 ||| || ||||||||||| | |||| | |||| || | ||| ||| Sbjct 62265 CATCCAGTCGAAGGGGTTGGCCGCCCCGTACAACT-TGTCGTAACCTAGCGCCCCAAGCA 62323 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || |||| || ||| ||||||| || | ||||||| | ||||| || | |||| Sbjct 62324 GGCGATCGGCCACGAACTCGATATACTGACTCATGAGGTCGCCATTCATCCCGACAAGGG 62383 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || |||| ||| | || || ||| || || | ||||| || | || || | Sbjct 62384 CGACCGGCAGAGCATCGCAGACGAATTCCCGTTCGATGTCAACGGCATCGGCAACGATTT 62443 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || ||| |||| ||| | |||||||| || | || ||||| | |||||| | Sbjct 62444 CACGGACACGGTACTCGGAGAGCTTGTTGCGAAGAAGACTG---TAGAGGAGGCAGGCGA 62500 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | ||| ||||| ||| ||||||| |||| || ||| |||||| |||| Sbjct 62501 AGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCA 62560 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || || ||| ||||| |||||||||||||||| Sbjct 62561 TGAGGCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCT 62620 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || ||||| || ||| | ||| |||| || || | | ||||||| Sbjct 62621 CGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAATGA---GTCAGAGGATCCGATCCAGC 62677 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA--- 48374 |||||||| || ||||| || || | || || ||||| |||||| Sbjct 62678 GTAGCGCCCACTCGGCCTTGCGGGCGACAGGAGGGACGGTGTCAATGGCATGGAAGAGGC 62737 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | ||| ||| || | |||| | ||||| ||| || | |||||||||| Sbjct 62738 GGGACTT---CTCGCCGGGGTCCTTGATGTAGGTGTCGAGGAGGAGAGAATACATCTCAG 62794 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||||| ||||||||||| | ||||||| | ||| | Sbjct 62795 AGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCAGGAAGCTGGA 62854 Query 48495 CTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 | || | | | ||| | | ||| ||||| ||| || || || || || ||||| Sbjct 62855 CGTC-GCGCATGAACCGGGTCGCCAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCAAAA 62913 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCCAGCCC 48610 ||||| |||||||| || ||| ||| |||||| | | | || ||| |||| Sbjct 62914 AAGGCGAGGACATGGGAAATGAAGTGGTGCTCGTCGGCAGACAGACGATCATGCCAGTGG 62973 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | || | | || |||||| || ||| | ||||||||||| || | || |||||| Sbjct 62974 GAGAGATCCTGGGACAAGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCACGGCCTTTTTG 63033 Query 48671 TA 48672 || Sbjct 63034 TA 63035 >seq83 Length=609517 Score = 223 bits (246), Expect = 6e-53 Identities = 572/857 (67%), Gaps = 23/857 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || ||||| |||||||| | ||| |||| || ||||||| ||| Sbjct 416966 CTGGTACTCGCCTACCCTCTTCTCGAAGAAGTTGGCCTTACCCTGCAGCGAGATGAGCTC 416907 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCA-GGCCCATCTGTTCCAGCA 47957 ||| || ||||||||||| | |||| | || | |||||| | | |||| Sbjct 416906 CATCCAGTCGAAGGGGTTGGCCGCCCGGTACATCT-TGCCGTGGCCCAGCGCCCCGAGCA 416848 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||||||||| | |||||| | |||||| || | ||| | Sbjct 416847 GGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGACGAGAG 416788 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || || | || | || |||||| || || | || || ||| | || || | Sbjct 416787 CGACAGGGAGTGCGTCGCAGACGAACTCCCGTTCGATGTCAACAGCGTCCGCAACGAT-T 416729 Query 48078 GCTT--AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || | ||| ||| || | |||||||| ||| | || ||||| | |||||| Sbjct 416728 GCCCGGACCGCTTC-CTCGGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAGGC 416673 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| | ||| ||||| ||| |||||| ||||||||||| ||| || || Sbjct 416672 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGG 416613 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | | ||||||||||| || || ||| ||||| |||||||||||||| Sbjct 416612 CATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGATGCC 416553 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || ||||| || ||| | ||| |||| || || || |||||| Sbjct 416552 CTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATC---GATCCA 416496 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | ||| |||||||| ||||| || | || | || || ||||| |||||| Sbjct 416495 GCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 416436 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | |||| || | | |||| || ||||| ||| || | ||||||||| Sbjct 416435 GCGATACTTG---TCGTCGGGGTCCTTGACGTAGGTGTCGAGGAGGAGGGAGTACATCTC 416379 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||||||||||||||| | |||||| | ||| Sbjct 416378 GGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGGGAGCTG 416319 Query 48493 CACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || | | | ||| | | | || ||||| ||| || ||||| || || || | Sbjct 416318 GACGTC-GCGCATGAAGCGCGCGGCGAGGTTCTCGACGACGATGCCATCGGAGGCGGCGA 416260 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA--GCATT-CCAGC 48608 ||||||| ||||| || | || ||||||||| | |||||||| | || |||| Sbjct 416259 AGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGGGGGTGAGACGGTGTTGCCAGT 416200 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | ||| ||||||||| || ||| | |||||||| || || | || || | Sbjct 416199 GGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCCACCGCCTTCT 416140 Query 48669 TGTACATGCCCCATATG 48685 |||| | |||| ||| Sbjct 416139 TGTAGAACTCCCAGATG 416123 >seq125 Length=520858 Score = 205 bits (226), Expect = 2e-47 Identities = 567/858 (66%), Gaps = 25/858 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || || || |||||||| |||||||||| || ||||||| ||| Sbjct 302249 CTGGTAATCTCCAACCCTCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTC 302308 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGT-TCCAGCA 47957 ||| || |||||||||| | ||| | | || | || || || |||| Sbjct 302309 CATCCAGTCGAAGGGGTTGACCACCCCAAACATCT-TATCGTGACCCAGTGACTCGAGCA 302367 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||| ||||| | ||| ||| | |||||| || | ||||| Sbjct 302368 GGCGGTCGGCCACGAACTCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCAACGAGGG 302427 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||| | || | | ||||||| ||| || | || || || | || || Sbjct 302428 CTACGGGAAGGGCGTCACAAACAAACTCCCGCTCGATGTCAACAGCGTCGGCAACGATGG 302487 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | || ||| ||| || | |||||||| ||| | || ||||| | ||| || | Sbjct 302488 CCCGGACACGGTCCTCCGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAAGCGA 302544 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | || | ||| ||||| ||| ||| ||| |||| |||||| ||| || |||| Sbjct 302545 AGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCA 302604 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || |||||||| || || || ||| ||||||||||||||||| |||| Sbjct 302605 TGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCT 302664 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || ||||| ||| | | ||| | || || || || |||||| Sbjct 302665 CGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTC---AATCCAGC 302721 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGC--ATGGCATCGTCTCTATGGCCCGGAAGA- 48374 || |||||||| |||| ||| || | | || | ||| || ||||| ||||||| Sbjct 302722 GCAGGGCCCAGTCGGCCT--TTCGGGAGACAGAGGGGACCGTGTCGATGGCACGGAAGAG 302779 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | |||| ||| | | |||| | ||||| || || | ||||||||| Sbjct 302780 ACGGGTCTT---CTCGTCAGGGTCCTTGATGTAGGTGTCCAGGAGGAGGGAGTACATCTC 302836 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 |||||| | ||||| || ||||||||||| ||||||||||| | ||||| | ||| Sbjct 302837 AGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCTG 302896 Query 48493 CACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || | | | ||| | | ||||||||| ||| || || ||||| || || | Sbjct 302897 GACGTC-GCGCATGAACCGGGCGGCGAGATTCTCAAGGACGATGCCGTCTGAGGCGGCGA 302955 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC-- 48609 |||| ||||| || || | ||| |||||||||| ||||| ||| || | | ||| Sbjct 302956 AGAAAGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCGTGGGAGAG-GCGATGCTGCCAA 303014 Query 48610 --CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | ||||| ||| ||||| || ||| | ||||| ||||| || | || || Sbjct 303015 TGGGGGACGTCCGGCGACAGATCCACCTCCTCCGCCGTCCAAAAGGAGGCCACCGCCTTC 303074 Query 48668 TTGTACATGCCCCATATG 48685 ||||| | |||| ||| Sbjct 303075 TTGTAGAACTCCCAGATG 303092 >seq202 Length=395113 Score = 185 bits (204), Expect = 2e-41 Identities = 564/859 (66%), Gaps = 27/859 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || ||||| |||||||| |||||||||| || ||||||| || Sbjct 243755 CTGGTACTCACCGACCCTTTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTC 243814 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| || ||| ||||||| |||| | || | ||||| | | |||| Sbjct 243815 CATCCAGTCGAAAGGGTTGGAGACCCCGTACATCT-TGCCGTAGCCCAGCGCCCCGAGCA 243873 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||| |||||||||| | ||| ||| ||||| || | ||| | Sbjct 243874 GGCGGTCGGCGATAAACTCGATGTACTGGCTCATCAGGACACCATTCATCCCGACGAGCG 243933 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||||||| || | || |||||| ||| || | ||||| || | || || Sbjct 243934 CGACGGGCAGGGCGTCGCAGACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGATAG 243993 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | || | ||| ||| | |||||||| ||| | | | || || | ||| |||| Sbjct 243994 CCCGGACCTTGTCCTCGGAGAGCTTGTTGCGGAGGAG---GCCGTAAAGGAGGCAAGCAA 244050 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | ||| ||||| ||| ||||||| ||||||||||| |||||| |||| Sbjct 244051 AGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCA 244110 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || || ||| ||||| ||||| |||||||||| Sbjct 244111 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCT 244170 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || ||||| ||| ||| | ||| || ||| ||| | || | ||||| Sbjct 244171 CGACGCAGGCGAAGGCGACGAGTCGCTCGGCG-AAGGAGC-CAGAAGACTCA-ATCCATT 244227 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG-- 48375 || |||||||| |||||| || || | | || ||||| ||||||| Sbjct 244228 GGAGGGCCCAGTCGGCCTTCCGGGCGACCGCGGGGACGTTGTCGATGGCGTGGAAGAGGC 244287 Query 48376 ----CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 ||||| | | | |||| | || ||| ||| || | |||||||| Sbjct 244288 GAAACTTCTGG------TCGGGGTCCTTGATGTACGTATCGAGTAGAAGGGAGTACATCT 244341 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || || |||||||| ||||||||||| | |||||| | | Sbjct 244342 CGGAGTGGATGTTCTCGATTGCAATCTGGAAACCGTAGAAGGCGCGGGCCTCGGGGAGTT 244401 Query 48492 GCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | || || | | | ||| | | || ||||| ||| || || || || || ||| Sbjct 244402 GGACGTC-GCGCATGAAGCGGGCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCA 244460 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC- 48609 || ||||| ||||| || | ||| |||||||||| || || ||| || | | ||| Sbjct 244461 AAAAAGGCGAGGACGTGGGAGACGAAGTGGCGCTCGTCGTCGGAGAG-GCGGTGCTGCCA 244519 Query 48610 CTG---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 ||| | ||| ||||||||| || ||| | |||||||| || || | || || Sbjct 244520 CTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCCAGAATGAGGCCACCGCCTT 244579 Query 48667 TTTGTACATGCCCCATATG 48685 ||||| | |||| ||| Sbjct 244580 CTTGTAGAACTCCCAGATG 244598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931201931193600