Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq202 161 2e-34 seq83 161 2e-34 seq1439 141 2e-28 >seq202 Length=395113 Score = 161 bits (178), Expect = 2e-34 Identities = 549/852 (64%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| |||| |||||| || || ||| | || ||| Sbjct 244597 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCATTCTGGACGGCGGAGGAGGTGGACCTG 244538 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | |||| | | ||| | ||| || ||| | ||||||| || || || Sbjct 244537 TCGCCGGACCTCTCCCAGTGGCAGCACCGC-CTCTCCGACGACGAGCGCCACTTCGTCTC 244479 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || || ||||| ||||| || || || || |||||| || || | Sbjct 244478 CCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCG 244419 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || || || | |||||| ||||||||||||||||| || || Sbjct 244418 CTTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAAT 244359 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 ||| || | ||||| ||| |||| || || || ||| |||||||| | ||| || Sbjct 244358 CGAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGAT-ACGTACATCAAGGACCCCG 244300 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | ||| ||| || || |||||||| || | ||| || ||||||| Sbjct 244299 ACCAGAAGTTTCGCCTCTTCCACGCCATCGACAACGTCCCCGCGGTCGCCCGGAAGGCCG 244240 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| | | ||||| | | | ||| | || | |||||| || || |||| Sbjct 244239 ACTGGGCCCTCCAATGGATTGA--GTCTTCTGGCTCC-TTCGCCGAGCGACTCGTCGCCT 244183 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || ||||||||||||||| ||| || || |||| |||||||||||||||| Sbjct 244182 TCGCCTGC-GTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 244125 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| || ||| ||||||||||||||| | | |||||||| Sbjct 244124 GAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGG 244065 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || ||||| ||||| || ||| |||| | | | | |||| | || | Sbjct 244064 CCTTCACTGCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCGA 244008 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 || | ||| |||| | || || || || |||||| |||||| Sbjct 244007 GGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCGA 243948 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | || ||||| || |||||||| ||||| |||| Sbjct 243947 CGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTGATGAGCCAGTACATCGAGTT 243888 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 | | ||||||| ||||| | |||||| || || | ||| | | ||||| Sbjct 243887 TATCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAGATGTACGGGGTCTCCAACCC 243828 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 ||||||| |||||| ||| ||| || | ||||||||||||||||| || || ||||| Sbjct 243827 TTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGGT 243768 Query 26310 CGGCGACTATCA 26321 ||| || || || Sbjct 243767 CGGTGAGTACCA 243756 >seq83 Length=609517 Score = 161 bits (178), Expect = 2e-34 Identities = 476/730 (65%), Gaps = 12/730 (2%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || ||||| || ||||| ||||| || || |||||| || || | | | Sbjct 416245 ACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCGTCGAGAACCTCGCCGCGCGCT 416304 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | || || ||| | |||||| |||||||| |||||||| ||||||| Sbjct 416305 TCATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCCATCG 416364 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| || || || || ||| | | ||| || || Sbjct 416365 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACG 416424 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 | | |||| || || |||||||| | | ||| | || | ||||| | Sbjct 416425 ACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACT 416484 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||||| | |||||| | || | ||| | || | |||||| || || ||||| | Sbjct 416485 GGGCCCTTCGCTGGATCGATT-CCTCCG-GCTCC-TTCGCCGAGCGCCTCGTTGCCTTCG 416541 Query 25895 C-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 | ||| || ||||||||||| ||| ||| || || ||| || ||||||||||||||| | Sbjct 416542 CCTGC-GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGC-GCTATCTTCTGGCTCAAG-A 416598 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | | || | ||||||||| || ||| |||||||| |||||| | | |||||||| | Sbjct 416599 AACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCC 416658 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 ||||| | || || |||||||| ||||||| ||| | | | | |||| | || | | Sbjct 416659 TCCACTGCGACTTCGCCTGCCTCCTCTACA---GCCTCCTCCGCAACAAGCTGTCCGAGG 416715 Query 26072 AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 | | ||| ||| | || ||||| || ||||| |||||| Sbjct 416716 AAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAACGGGAGTTCGTCTGCGACG 416775 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191 | || |||||| ||||||||||| ||||| |||| | Sbjct 416776 CACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCG 416835 Query 26192 TGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGT 26251 ||||||||| ||||| | |||||| | || || | ||| | || | ||||| | Sbjct 416836 TGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCT 416895 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| ||| ||| || | || ||| |||||||||| || |||||||| | Sbjct 416896 TCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTAG 416955 Query 26312 GCGACTATCA 26321 |||| || || Sbjct 416956 GCGAGTACCA 416965 >seq1439 Length=74689 Score = 141 bits (156), Expect = 2e-28 Identities = 478/728 (66%), Gaps = 24/728 (3%) Strand=Plus/Minus Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA-GATTCACCAG 25661 || || ||||| ||||| || || || || |||||| ||| |||| | |||| | Sbjct 62918 GCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTG-GCGACCCGGTTCATGCG 62860 Query 25662 GGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 || || ||| | | || ||||| |||||||| |||||||| |||||||| || Sbjct 62859 CGACGTCCAGCTTCCTG-AGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACA 62801 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAG 25780 | ||||||||| ||||| | || || || ||||| | ||| || ||||| Sbjct 62800 TCCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGT 62741 Query 25781 ATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTGGGCC 25839 || || || |||||| || ||| ||| | || | ||||| |||||| Sbjct 62740 CCCGCCTCTTCCATGCCATTGA-CACCGTCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCG 62682 Query 25840 ATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGC 25898 | |||||| | || | || | || | |||||| || || ||||| || ||| Sbjct 62681 CTACGCTGGATCGG-ATCCTCTGA-CT-CATTCGCCGAGCGCCTCGTTGCCTTCGCCTGC 62625 Query 25899 TGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957 || ||||||||||| ||| ||| || || |||| ||||||||||||||||| || | Sbjct 62624 -GTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGAG 62567 Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017 | |||||| || || |||||| |||||||||||| | | |||||||| |||||| Sbjct 62566 GCCTCATGCCGGGTCTCACCTTTTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACT 62507 Query 26018 GAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG-ACC 26076 | || || |||||||| ||||||| | | ||| | | |||| | |||| ||| ||| Sbjct 62506 GCGACTTCGCCTGCCTCCTCTACA--GTCTTCTT-CGCAACAAGC--TCTC-CGAGTACC 62453 Query 26077 GTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 || | | || ||| | || || || || ||||| ||| || Sbjct 62452 GTGT-CCGTGAAATCGTTGCCGATGCCGTTGACATCGAACGGGAATTCGTCTGCGATGCT 62394 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | || ||||| | |||||||| || || || |||| ||| Sbjct 62393 CTGCCGGTCGCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTG 62334 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 ||||| | ||||| | ||| || || || | ||| | || | ||||| ||| Sbjct 62333 GCCGATCGCCTGCTTGGGGCGCTAGGTTACGACAAGTTGTACGGGGCGGCCAACCCCTTC 62274 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 |||| ||||| ||| ||| || | |||||||| |||||||| || |||||||||||| Sbjct 62273 GACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGC 62214 Query 26314 GACTATCA 26321 |||||||| Sbjct 62213 GACTATCA 62206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928514885937600