Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq83 145 9e-30 seq1439 129 7e-25 seq215 127 2e-24 seq2275 123 3e-23 seq202 123 3e-23 seq125 123 3e-23 seq308 89.7 6e-13 seq88 84.2 3e-11 >seq83 Length=609517 Score = 145 bits (160), Expect = 9e-30 Identities = 241/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||||||||||||||||| |||| || || || || ||||| |||||||||||||| | Sbjct 416512 GCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCT 416571 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | ||||||||||| | ||| | ||||| || || |||||||| ||||| |||||| | Sbjct 416572 CCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCA 416631 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | ||||| || ||||| || ||||| |||||| || || ||| |||| | || Sbjct 416632 ACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC-AGC 416690 Query 65246 CT-TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 || | || || | | | ||| | ||| || ||||| || || ||||| Sbjct 416691 CTCCTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGAC 416750 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGA 65363 || || | |||| ||| ||||||||||| ||| |||| |||| |||||| ||| Sbjct 416751 ATCGAACGGGAGTTCGTCTGCGACGCACTCCC-TGTCGCTCTCGTCGGGATGAACGTTGA 416809 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| | ||||||| |||| ||| | || || || ||| Sbjct 416810 TCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTC 416852 >seq1439 Length=74689 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| |||||||||||||| |||| || || || || ||||| |||||||||||||| || Sbjct 62658 CTCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTC 62599 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||||| || | ||| | |||||||| || |||||||| || || ||| ||||| Sbjct 62598 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAA 62539 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 62538 CGAGCTCATCTCCCGTGACGAGGGCCTCCAC 62508 >seq215 Length=379446 Score = 127 bits (140), Expect = 2e-24 Identities = 250/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| | || ||| || || || |||||| || ||||||||| Sbjct 310512 CCAGGAACTGGAAAGACTTTGCTTGCCAAGGCAATTGCTGGTGAAGCAGGTGTCCCATTT 310571 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || | | | ||||| || |||||||||||||| ||||| | | || Sbjct 310572 TTCTCAATT-TCAGGATCTGAATTTGTAGAAATGTTTGTTGGTGTCGGTGCTTCACGAGT 310630 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| || || || | | ||| || ||| || |||||||| || |||||||||| Sbjct 310631 TCGTGACCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTGTTTGTTGATGAGAT 310690 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || | |||| | | | || | | | | || |||||| || |||||| Sbjct 310691 CGATGCCGTTGGTAGGCAAAGAGGAACAGGAATTGGAGG--AGGAAATGATGAAAGAGAA 310748 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || | ||||| || | || || |||||||||||||| | ||||| || | Sbjct 310749 CAGACTCTCAATCAGCTTTTGACTGAAATGGATGGCTTTGAAGGAAATACTGGTATAATT 310808 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || || || |||| || || || ||| || | ||||| || ||||| Sbjct 310809 GTCATTGCAGCGACCAACCGCGCAGACATTCTAGATTCTGCTTTACTTCGGCCTGGTCGA 310868 Query 175672 TTTGA 175676 ||||| Sbjct 310869 TTTGA 310873 >seq2275 Length=40372 Score = 123 bits (136), Expect = 3e-23 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||| ||||| ||| | |||||| | ||| ||||| || || |||||| | Sbjct 23542 GGTGCCCGTATCCCTAAAGGTGTCCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCTTG 23483 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 || || || || || ||||| || ||||||||| || || | || | | | Sbjct 23482 CTTGCTAAGGCAATTGCTGGTGAGGCAGGTGTCCCATTTTTCTCAATT-TCAGGATCTGA 23424 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| || |||||||||||||| ||||| | ||||| ||||| || | | || Sbjct 23423 ATTTGTAGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATCTTTTCAAGAAGGC 23364 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | || ||| || || ||||| || |||||||||||||||| || || | |||| | Sbjct 23363 CAAAGAGAATGCTCCTTGCATTGTGTTTGTTGATGAGATTGATGCTGTTGGAAGGCAAAG 23304 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | || | | | | || |||||| || || ||||| || ||||||| || | Sbjct 23303 AGGAACAGGAATCGGAGG--AGGAAATGATGAAAGGGAACAGACTCTTAATCAGCTTTTG 23246 Query 175573 ACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 |||||||||||||||||||| |||| || || || | || || || || || || Sbjct 23245 ACCGAGATGGATGGCTTTGAAGGCAAT---ACAGGTATAATTGTGATCGCAGCAACCAAC 23189 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||| || || || ||| || | ||||| || || || ||||| Sbjct 23188 CGCGCAGACATTCTAGATTCTGCTTTGCTTCGGCCTGGGCGATTTGA 23142 >seq202 Length=395113 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 65025 GAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084 |||||| | ||||| | ||||| |||| | ||| |||||||||||||||| || Sbjct 244247 GAAGGCCGACTGGGCCCTCCAATGGATTGAGTCT---TCTGGCTCCTTCGCCGAGCGACT 244191 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 | || || || || || ||||| ||||| |||||||| || |||||||| || | || Sbjct 244190 CGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTG 244131 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | | |||||||| || |||||||| || || |||||| || || || || ||||| || Sbjct 244130 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 244071 Query 65205 TGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| || ||| || ||||| Sbjct 244070 CGAGGGCCTTCACTGCGACTTTGC 244047 >seq125 Length=520858 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| || |||||||| || | || || || ||||| ||||| ||||||||||| || | Sbjct 302703 GCTCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCT 302644 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | ||||||||||| | |||| | |||||||| || |||||||| || || |||||| | Sbjct 302643 CCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGA 302584 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 | || ||||| ||||| || ||||| || || Sbjct 302583 ACGAGCTTATCTCCCGTGACGAGGGCCTTCA 302553 >seq308 Length=314964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||| | | |||| ||| ||||| || ||||| || || || | || | || || || Sbjct 202834 CTTTTGGTGGGTCCGCCGGGTACCGGCAAGACGCTGCTGGCGAGGGCGGTGGCAGGAGAG 202775 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | ||||| ||| || ||| | || | | || |||||| | ||||| || ||| Sbjct 202774 GCCGGAGTCCCGTTCTTCTCGTGTGCAGCGTCCGAGTTCGTGGAGCTATTTGTGGGAGTG 202715 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTC 175479 || || ||||| || ||||| ||||| | || | || ||| || ||||| Sbjct 202714 GGGGCGTCGAGGGTCCGGGATCTGTTTGAGAAGGCAAAGGCTAAGGCACCGTGCATTGTT 202655 Query 175480 TTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAA 175538 ||||| ||||| |||||||||||||| | ||| | | ||||| | | || | || Sbjct 202654 TTCATCGATGAAATTGATGCGGTGGGAAGGCAGAGAGGAGCTGG-GCTTGGCGGTGGCAA 202596 Query 175539 TGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||| ||||| || || || || ||||| || | || ||||||||||| || Sbjct 202595 TGATGAGAGGGAGCAGACTATCAATCAGCTCTTGACGGAGATGGATGGGTT 202545 >seq88 Length=602216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||| || ||||| || || || || ||||| ||| | | || || Sbjct 290227 GAGATGTTTGTCGGAGTGGGGGCTTCGAGAGTGCGGGATCTGTTTAACAAGGCA----AA 290282 Query 175462 AATCAAC----CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAG 175517 || ||| |||| | || || ||||||||||||||||| || || | ||| | | Sbjct 290283 GATGAACTCTCCATGCCTGGTATTTATTGATGAGATTGATGCAGTAGGAAGGCAGAGGGG 290342 Query 175518 CGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | || | | | | || |||||| || |||||||| ||| | ||||| |||||||| Sbjct 290343 AACAGGAATTGGAGG--AGGAAATGATGAAAGAGAACAGACACTGAATCAGCTACTCACT 290400 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 || |||||||| ||| ||| | ||| || | || ||||| || ||||| Sbjct 290401 GAAATGGATGGTTTTAGTGGTGATAGTGGAGTTATTGTAATTGCTGCTACTAA 290453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596357705935200