Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1530 123 4e-23 seq299 86.0 1e-11 >seq1530 Length=69702 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || || ||||| | || |||| ||| | |||| || || |||||| Sbjct 26083 AATTTGCATTCCTCCCCTCAACCTGAGCACCAAATGAAGGGTAGATTCCTTCTGAATATT 26142 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || || | | ||| ||||||||||| || ||||| || || || || || Sbjct 26143 GTAGTCTGCTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAATATCAACCTTTGCTG 26202 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || ||||| ||||| || |||| |||| ||| ||| || || || Sbjct 26203 GTCTGGGGGAATGCCCTCTTTGTCTTGAATCTTGGCCTTTACATTATCAATGGTGTCAGA 26262 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || || || || || || ||||| || || ||||| || || ||||||||| Sbjct 26263 AGATTCGACCTCAAGGGTGATGGTCTTACCGGTGAGAGTTTTAACGAAAATTTGCATT 26320 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | || | ||| || || || ||||| | || || | | | Sbjct 24965 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTGCGACCA 25024 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| || ||||| || || || || ||||| | || || || ||||| Sbjct 25025 TCCTCTAATTGTTTCCCAGCAAAGATCAACCTTTGCTGATCTAGGGGAATACCCTCTTTG 25084 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | ||| ||||||||||||||| ||||| || || || || Sbjct 25085 TCTTGAATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACCTCAAGGGTGATG 25144 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || ||||||||| Sbjct 25145 GTCTTGCCGGTGAGAGTCTTAACGAAAATTTGCATT 25180 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| || || |||||| ||||| | || || | | ||| Sbjct 25196 AGAACCAAATGAAGGGTAGATTCCTTCTGAATATTGTAGTCTGCTAGGGTGCGACCATCC 25255 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 ||||||||||| || ||||| || || || || || || || || || || ||||| ||| Sbjct 25256 TCTAATTGTTTCCCAGCAAATATCAACCTTTGCTGGTCTGGGGGAATGCCCTCTTTGTCT 25315 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| |||| ||| ||| || || ||||| || || || || || ||||| Sbjct 25316 TGAATTTTGGCCTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATAGTC 25375 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||| || |||||||| Sbjct 25376 TTGCCGGTGAGAGTCTTTATGAAAATTTGCAT 25407 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||| | || || | ||| || ||||| || || ||||| || | || Sbjct 262128 ATATTATAGTCAGCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTT 262069 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || ||||| || || || || || ||||| || | || | ||| ||||| Sbjct 262068 TGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTG 262009 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || |||||| || ||||| || || || || || || ||||| ||||| |||||| Sbjct 262008 TCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATTTGC 261949 Query 193359 AT 193360 || Sbjct 261948 AT 261947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899334854002800