Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1530 107 4e-18 seq299 96.9 7e-15 >seq1530 Length=69702 Score = 107 bits (118), Expect = 4e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || | || || || |||| || |||||||| ||||||||||| || || Sbjct 24997 GATGTTGTAGTCCGCTAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAAGATCAACCT 25056 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| | || || || ||||| ||||| |||||| ||| |||||| |||| Sbjct 25057 TTGCTGATCTAGGGGAATACCCTCTTTGTCTTGAATTTTAGCTTTCACATTATCAATAGT 25116 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || ||||| || || || || ||||| || || || | || |||| || || || Sbjct 25117 ATCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACGAAAATTTG 25176 Query 192534 CATT 192537 |||| Sbjct 25177 CATT 25180 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | |||| ||||| ||| | ||| || | | || || | || ||| Sbjct 26339 ACCAAATGAAGGGTAGATTCTTTCTGGATGTCATAGTCTGCCAGGGTACGACCGTCCTCC 26398 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || || ||||||||||| || ||||| || || || || || || || || ||||| Sbjct 26399 AACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGA 26458 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || |||||||||| || | || || ||||| || || || || ||||| ||| Sbjct 26459 ATCTTGGCTTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGATGGTCTTA 26518 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAAAA 192549 || || | || |||| |||||||||||| | | || || || Sbjct 26519 CCGGTGAGAGTCTTAACAAATATCTGCATCTGAATAAAATAA 26560 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | || || || | || || | || || ||||||||||| || || Sbjct 25909 GATGTTATAGTCTGCTAGGGTGCGACCGTCCTCTAGCTGCTTCCCAGCAAAGATCAACCT 25968 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || ||||| || ||||| || ||| |||| |||| | || | Sbjct 25969 CTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATCTTAGCCTTTATATTATTAATGGT 26028 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| ||||| || | || ||||| || || || Sbjct 26029 GTCAGAAGATTCAACCTCAAGGGTGATGGTCTTACCGGTGAGAGTCTTAATGAAAATTTG 26088 Query 192534 CATT 192537 |||| Sbjct 26089 CATT 26092 Score = 84.2 bits (92), Expect = 4e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || ||||| || | || || || | || || | || || |||||||||| Sbjct 25447 CTTTTGA-ATGTTATAGTCTGCTAGGGTGCGACCGTCCTCTAGCTGCTTCCCAGCAAAGA 25505 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || ||||| || || || || || ||||| || ||||| || || ||||||||| Sbjct 25506 TCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTTACATTAT 25565 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || ||||| || || || || ||||| ||||| || | || || || | Sbjct 25566 CAATTGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTGATGA 25625 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 25626 AAATTTGCATT 25636 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | || || || | || || | || || ||||||||||| || || Sbjct 25681 GATGTTATAGTCTGCTAGGGTGCGACCGTCCTCTAGCTGCTTCCCAGCAAAGATCAACCT 25740 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || || ||||| || ||||| || || ||||||||| || | Sbjct 25741 CTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTTACATTATCAATGGT 25800 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || ||||| || || || || ||||| ||||| || | || || || || || || Sbjct 25801 GTCAGAAGATTCAACCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTGATGAAAATTTG 25860 Query 192534 CATT 192537 |||| Sbjct 25861 CATT 25864 >seq299 Length=319228 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| || | | ||| || |||| |||||||| || ||||||||||| | || Sbjct 262585 GATGTTATAGTCTGCCAGTGTGCGCCCATCCTCCAATTGCTTGCCAGCAAAGATCAGCCT 262526 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || ||||| ||||| || || || ||||| || || ||||| |||| Sbjct 262525 CTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGT 262466 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || ||||| ||||| || || || | ||||| | ||| || || Sbjct 262465 ATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCGGTGAGGGTTTTCACAAAAATTTG 262406 Query 192534 CAT 192536 ||| Sbjct 262405 CAT 262403 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| |||| || || || |||| |||||||| || ||||||||||| | || Sbjct 262129 GATATTATAGTCAGCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCT 262070 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || || || || || || || || || ||||| || || ||||| |||| Sbjct 262069 TTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGT 262010 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || ||||| ||||| || ||||| | ||||| | ||| || || Sbjct 262009 GTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAAATTTG 261950 Query 192534 CAT 192536 ||| Sbjct 261949 CAT 261947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984121583135250