Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1530 104 4e-17 seq299 86.0 1e-11 >seq1530 Length=69702 Score = 104 bits (114), Expect = 4e-17 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| || || |||||||| || || ||||| ||||| || || || || || | Sbjct 26391 CGTCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCT 26450 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || |||||||||| || || || || ||||| || || || || | Sbjct 26451 TGTCTTGAATCTTGGCTTTTACATTATCAATGGTGTCAGAAGATTCGACCTCAAGGGTGA 26510 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAA 172081 |||| ||||| || | || |||| ||||||||||| | | |||||| Sbjct 26511 TGGTCTTACCGGTGAGAGTCTTAACAAATATCTGCATCTGA--ATAAAA 26557 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || |||||||| || | ||||||||||| ||||| ||||| || || Sbjct 262557 TCCTCCAATTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTG 262498 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| || || ||||| |||||||| || || || || ||||| ||| Sbjct 262497 TCCTGTATCTTTGCCTTCACATTGTCGATAGTATCCGAGCTCTCAACCTCCAGAGTGATG 262438 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | ||||| | || || ||||| Sbjct 262437 GTCTTCCCGGTGAGGGTTTTCACAAAAATTTGCAT 262403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904814507007000