Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 125 2e-23 seq2275 122 3e-22 seq375 118 3e-21 seq81 114 4e-20 seq408 113 1e-19 seq215 109 2e-18 seq1231 91.5 4e-13 seq262 91.5 4e-13 >seq10 Length=1173562 Score = 125 bits (138), Expect = 2e-23 Identities = 252/368 (68%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 288978 TTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGC 289037 ||| | |||||||||||||||| || | || | || ||| | ||||| ||| Sbjct 468758 TTCTCGTTCATCATTTGAACCTGAGAAACCTCC---ACGGCCTCTTGCTCGACCAATAGC 468814 Query 289038 ATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTC 289097 ||||||||| ||||||||||| | || || | | ||||| || | ||| || | Sbjct 468815 ATCAATTTCATCAATGAAAATTATACTAGGGGCACACTGTCTTGCTTCTTGAAACAAGTT 468874 Query 289098 TCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG 289157 |||||| | ||||| ||||| ||||||| ||||||| | || || ||| | || | ||| Sbjct 468875 TCTTACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAATCTGAACCAGA-AATTG 468933 Query 289158 A-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTC 289216 | | || | ||||| | ||||||||| ||| | || || || ||||| ||||| | Sbjct 468934 ACAGAAACGGTACATCAGATTCGCCTGCAGTTGCTTTTGCAAGTAGCGTCTTTCCTGTAC 468993 Query 289217 CAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTC 289275 |||| || || | | || | || ||||||| ||| || ||||| || || ||| Sbjct 468994 CAGGAGGACCTACAAGAAGGGCACCTTTTGGTATTTTAGCTCCCAG-TTCCTCGTACTTC 469052 Query 289276 TCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCT 289335 | ||| | || | || | |||| ||| | ||| | ||| || |||||||| || Sbjct 469053 TTAGGATTTTTGAGGAAATGCACAAACTCCATTATTTCTTGTTTGGCTTCATCACAGCCA 469112 Query 289336 GCTACATC 289343 || ||||| Sbjct 469113 GCAACATC 469120 >seq2275 Length=40372 Score = 122 bits (134), Expect = 3e-22 Identities = 345/516 (67%), Gaps = 32/516 (6%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| ||| || || | |||| || || || | ||| |||||| Sbjct 23139 CTGTCAAATCGCCCAGGCCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCT 23198 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTT--AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| ||| | | |||| | ||| |||||||| || |||| |||| Sbjct 23199 GCGATCACAATTATACCT--GTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGAT 23256 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025 |||| || |||||||||||||||||| |||| | |||| || | |||| || Sbjct 23257 TAAGAGTCTGTTCCCTTTCATCATTT---CCTCCT-------CCGATTCCTGTTCCTCTT 23306 Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | |||||||||||||| || |||| || | | || |||| ||| | | | || Sbjct 23307 TGCCTTCCAACAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCC 23366 Query 289084 AT--TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | || ||| | || | || || || || |||| ||||||| ||||||||||||||| Sbjct 23367 TTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATT 23424 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||| | || | |||| | |||| ||| ||| || || || | |||| | || || Sbjct 23425 CAGATCCTGA-AATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGC 23483 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TACTTTTGCCC 289258 | ||||| || ||||| || || || | | || || || || || ||| ||| Sbjct 23484 AAGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACCC 23543 Query 289259 -CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATA 289316 | |||| || || | || || | || | || || || | |||| | ||| || | Sbjct 23544 ACTGCAG---TAAATCTTTCTGGCTTTTTCAGGAACTCAACTACTTCCATGAAG-TCTTG 23599 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| ||||| ||| || |||||| ||||||| Sbjct 23600 TTTTGCTTCATCTACTCCAGCAACATCATCAAAAGT 23635 >seq375 Length=269902 Score = 118 bits (130), Expect = 3e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || || ||||| || | ||||||||| || |||||||||||| | |||| | ||| Sbjct 128981 GCTATTAGTCCACATTTCTCACACACATGAACCCTGTAAGCATCACTTTGGTCAAACAGC 128922 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || |||| |||| | | ||||| |||| |||||| || || |||||||| ||||| Sbjct 128921 CGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGCTCCATCTCACCA 128862 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || |||||||||||||| |||| | || || || ||||| | || || | || | Sbjct 128861 AACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCTGGCTGTCTGGTAAGTATCTGCACA 128802 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| || ||| |||||||| ||||| ||||| || | ||| || || Sbjct 128801 GGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGTCTCTGATAATAT 128742 Query 251644 GCGGGACC 251651 | ||||| Sbjct 128741 GTAGGACC 128734 >seq81 Length=612130 Score = 114 bits (126), Expect = 4e-20 Identities = 232/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| || ||| |||||||||||| ||| | | |||||| Sbjct 359095 ATTTCTGACAGTACCATCATATTTAACCATTATGTCTTCCATAGCCTTTACAAGACGACG 359154 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || || || || ||| || || ||||| |||||||| | ||| | | |||||| Sbjct 359155 TTGGATGTAGCCCGTCTCAGAAGTCTTGACAGCAGTATCAATCAAACCTTCCCTACCACC 359214 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | ||||| ||| | ||| | || | || |||| || || Sbjct 359215 CATGGCATGAAAAAAGAACTCTTGTGGTGTCAACCCACGAAGGTATGAATTCTCCACAAA 359274 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 |||||| || ||| || ||| || || || || |||| || | | || | | Sbjct 359275 ACCACGACTTTCAGGCCCATAATCGTCTTTAGTGAAATGAGGCAATGTTC-GATCAATGA 359333 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || | || || || || || ||||| |||||||| |||| || | | ||||||| Sbjct 359334 -AACCAAAGGGTATTCGTTTGCCCTCAACATTCTGCTGCCCCACACAGGCAGTCATCTGT 359392 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || | | ||| || || || |||||| | ||||| Sbjct 359393 GAGATGTTGATAAAACTACCTTTTGATCCAGCAGTAACCAT 359433 >seq408 Length=251704 Score = 113 bits (124), Expect = 1e-19 Identities = 260/383 (68%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCt 289022 || || ||||| ||| | |||||||||||||||| || | || ||| ||| | Sbjct 203352 TGGTTCAGTGTGCTTTCTCGTTCATCATTTGAACCTGCAAAACCTCCACGAC---CTC-T 203407 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | | ||||| |||||||||||| ||||||||||| | || |||| | ||||| || Sbjct 203408 TGCTCGACCAATAGCATCAATTTCATCAATGAAAATTATACTAGGAGCACACTGTCTAGC 203467 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | ||| || | ||| || | | | ||||| |||||| ||||||| | || || Sbjct 203468 TTCTTGAAACAAGTTTCTCACCCTAGCCGGTCCAACGCCAACAAACATTTCCATGAAATC 203527 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | |||| | |||| ||| | ||| ||||| ||| |||| |||| Sbjct 203528 TGAACCAGA-AATTGATAGAAATGGCACACCAGATTCACCTGCAGTTGCTTTCGCAAGAA 203586 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 ||||||| ||||| ||||| || || | | || ||||| || || | || || |||| Sbjct 203587 GTGTCTTTCCTGTACCAGGAGGACCTACAAGAAGGACTCCTTTAGGAATCTTAGCTCCCA 203646 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | || ||| |||| ||| | || | || | |||| ||| | ||| | ||| Sbjct 203647 G-TTCCTCATACTTCTTAGGATTTTTAAGGAAGTGCACAAACTCCATTATTTCCTGTTTA 203705 Query 289321 GCCTCATCACATCCTGCTACATC 289343 || |||||||| || || ||||| Sbjct 203706 GCTTCATCACAGCCAGCAACATC 203728 >seq215 Length=379446 Score = 109 bits (120), Expect = 2e-18 Identities = 341/514 (66%), Gaps = 28/514 (5%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | ||||| ||| ||| || | |||| || || || | ||| || ||| Sbjct 310876 CTGTCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCT 310817 Query 288910 GCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGAT 288967 || | |||| ||| | | ||| ||| ||| |||||||| || |||| |||| Sbjct 310816 GCAATGACAATTATACCAGTA--TTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGAT 310759 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttt 289025 | || || ||||| |||||||||||| |||| | || | || | |||| || Sbjct 310758 TGAGAGTCTGTTCTCTTTCATCATTT---CCTCCT-------CCAATTCCTGTTCCTCTT 310709 Query 289026 tt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||||| ||||| || || |||| || | | ||| |||| ||| | | | || Sbjct 310708 TGCCTACCAACGGCATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCC 310649 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | || | || | || || || || || | ||||||| ||||||||||||||||| Sbjct 310648 TTCTTGAAAAGGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCA 310589 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | || | |||| | |||| ||| |||||| || || | |||| | || || | Sbjct 310588 GATCCTGA-AATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAA 310530 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG--TAC-TTTTGCCCC 289259 ||||| || ||||| || || || || || || || || || ||| | || | Sbjct 310529 AGTCTTTCCAGTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCAC 310470 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATT 289318 |||| | || |||| ||||| ||| | || || || | |||| || || | || Sbjct 310469 TGCAG---TGAATCTCTC-GGGCTTTTTCAGGAACTCAACTACTTCCATAAAGTCCTGTT 310414 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| ||||| ||| || ||||| ||||||| Sbjct 310413 TTGCTTCATCTACTCCAGCAACATCGTCAAAAGT 310380 >seq1231 Length=90643 Score = 91.5 bits (100), Expect = 4e-13 Identities = 205/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 302569 ATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACA 302628 || || ||||| ||| | | |||||||||||| || || || || || || || Sbjct 39954 ATATCCTCCATCGCCTTCACGAGACGACGCTGAATGTAGCCGGTCTCGGAAGTCTTGACG 40013 Query 302629 GCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 || ||||| | ||||| | | ||| ||||| ||||||||||| | |||| ||| Sbjct 40014 GCGGTATCGACCAGACCTTCCCTACCTCCCATGGCATGGAAGAAGAATTCTTGTGGTGTC 40073 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 | || | || | ||| |||| |||||||| || || ||| | ||| || Sbjct 40074 AAACCGCGAAGGTAAGAGTTCTCCACGAAACCGCGGCTTTCAGGCCCGTAGTCATCTTTA 40133 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 |||||||| |||| || | | | | | || |||| || || || || || || ||| Sbjct 40134 GTAAAGTGAGGCAATGTTCGATCCACGAACCCAAATGGAATTCGTTTGCCCTCGACATTC 40193 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCA 302868 ||||| |||| ||| | ||||||| || || || | | || ||||| || || ||| Sbjct 40194 TGCTGCCCCACGCAGGCGGTCATCTGTGAGATGTTGATAAAGCTACCCTTCGAACCTGCA 40253 Query 302869 TTTACCAT 302876 | ||||| Sbjct 40254 GTAACCAT 40261 >seq262 Length=346991 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| || || |||||||| ||||| ||||| |||||||| | |||||| || Sbjct 236542 AAATTACCCTTTCTTTTGCCACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACC 236601 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 | |||||| |||| |||||||||||| || ||||| || || || |||| Sbjct 236602 CTTAGCATGGGAACAATACCATTGGATGTTCCATTTGTACCACGGATAT 236650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471281759505855