Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1190 105 6e-18 seq7364 93.3 3e-14 seq267 93.3 3e-14 seq299 86.0 5e-12 >seq1190 Length=94153 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||||| ||||| || ||||| ||| |||| |||| Sbjct 59792 ATGCAAATCTTCGTCAAGACTTTGACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 59733 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 59732 GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 59673 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | | || |||||||||||||| Sbjct 59672 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAAC 59613 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 ||||| || || ||||| | ||| | ||| | || || Sbjct 59612 ATTCAGAAGGAGTCTACCCTTCACCTTGTGCTGAGGCT 59575 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || || || ||||| || || ||| |||| |||| || Sbjct 39792 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTCGAGGTGGAGAGCTCT 39851 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || |||||| ||||| || || | ||| ||| Sbjct 39852 GAC---ACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGAC 39908 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || || | ||| || || ||||| ||||||| | | || ||||||||||| Sbjct 39909 CAGCAAAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTAC 39968 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 |||||||| || || ||||| | ||| | ||| | || || Sbjct 39969 AACATTCAGAAGGAGTCTACCCTTCACCTTGTGCTGAGGCT 40009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || || || ||||| || || ||| |||| |||| || Sbjct 59481 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTCGAGGTGGAGAGCTCT 59422 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || |||||| ||||| || || | || ||| Sbjct 59421 GAC---ACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCGCCGGAC 59365 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || || | ||| || || ||||| ||||||| | | || |||| |||||| Sbjct 59364 CAGCAAAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTAC 59305 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 |||||||| || || || || | ||| | ||| | || || Sbjct 59304 AACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGAGGCT 59264 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | ||||| || ||||||||| | || |||| Sbjct 40248 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 40307 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| ||||| || || | || |||||| Sbjct 40308 GACACGATCGATAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 40367 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||||||||| | | | || |||| ||||||||| Sbjct 40368 CAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTGGCAGATTACAAC 40427 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 40428 ATTCAGAAGGAATCCACCCTTCACCTGGTG 40457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | ||||| || ||||||||| | || |||| Sbjct 59253 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 59194 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| ||||| || || | || |||||| Sbjct 59193 GACACGATCGATAATGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 59134 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||||||||| | | | || |||| ||||||||| Sbjct 59133 CAGAGGCTCATCTTTGCTGGGAAGCAGCTGGAGGACGGCCGCACCCTGGCAGATTACAAC 59074 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || | ||| ||||| Sbjct 59073 ATTCAGAAGGAATCCACCCTTCACCTGGTG 59044 >seq7364 Length=1738 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 |||||||| ||||||||||| | ||||| || ||||| ||| | || |||| || | Sbjct 117 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 176 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT-GGATC 110390 || || ||| | | | ||| ||||| |||| ||| ||| || | | | ||||| Sbjct 177 -GACACGATCGCCAACCTTAAAGCAAAGATCCACGAC-AAGGAGGGGTTCTCATCGGATC 234 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || |||||||| ||||||| | | || ||| ||||||| Sbjct 235 AGCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACA 294 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| |||| | |||| || || || Sbjct 295 GCATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 343 >seq267 Length=345500 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 |||||||| ||||||||||| | ||||| || ||||| ||| | || |||| || | Sbjct 56588 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 56529 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT-GGATC 110390 || || ||| | | | ||| ||||| |||| ||| ||| || | | | ||||| Sbjct 56528 -GACACGATCGCCAACCTTAAAGCAAAGATCCACGAC-AAGGAGGGGTTCTCATCGGATC 56471 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || || | ||| || |||||||| ||||||| | | || ||| ||||||| Sbjct 56470 AGCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACA 56411 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || | ||| |||| | |||| || || || Sbjct 56410 GCATTCAGAAGGAATCCACTCTTCACCTGGTTCTCCGACTCCGTGGTGG 56362 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| | ||||| || ||||| ||| | || || | Sbjct 261035 ATGCAGATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 261094 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || ||||| ||||| |||||| | ||| |||||| Sbjct 261095 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 261154 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || |||||||| ||||||| | | || |||| || ||||| Sbjct 261155 CAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAT 261214 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| | ||| Sbjct 261215 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 261244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412698629728595