Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1190 113 4e-20 seq7364 87.8 1e-12 seq267 87.8 1e-12 seq1710 86.0 5e-12 seq299 86.0 5e-12 seq1530 84.2 2e-11 >seq1190 Length=94153 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || ||||| ||||| || || || ||||| ||| |||| |||| ||| | Sbjct 59792 ATGCAAATCTTCGTCAAGACTTTGACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 59733 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || || ||| | ||| ||| || Sbjct 59732 -GACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 59674 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| ||||| | | || ||||||| ||||| Sbjct 59673 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAA 59614 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| ||||||||||| | ||| | ||| |||| Sbjct 59613 CATTCAGAAGGAGTCTACCCTTCACCTTGTGCTGAG 59578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || || || ||||| || || ||| |||| |||| ||| Sbjct 39792 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACAATCACCCTCGAGGTGGAGAGCTCT 39851 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || || || | ||| ||| || Sbjct 39852 -GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCA 39910 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||| | | || ||||||| ||||| Sbjct 39911 GCAAAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGATTACAA 39970 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| ||||||||||| | ||| | ||| |||| Sbjct 39971 CATTCAGAAGGAGTCTACCCTTCACCTTGTGCTGAG 40006 >seq7364 Length=1738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||||||||| | || || || ||||| ||| | || |||| ||| Sbjct 117 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 176 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT-GGATC 107673 || || ||| | | | ||| |||||| ||| || || || || | | | ||||| Sbjct 177 -GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGG-GTTCTCATCGGATC 234 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||||| ||||| | | || ||| || |||| Sbjct 235 AGCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACA 294 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||| || || | ||| |||| Sbjct 295 GCATTCAGAAGGAATCCACTCTTCACCTGGT 325 >seq267 Length=345500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||||||||| | || || || ||||| ||| | || |||| ||| Sbjct 56588 ATGCAAATTTTTGTCAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTGGAGAGCTCA 56529 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT-GGATC 107673 || || ||| | | | ||| |||||| ||| || || || || | | | ||||| Sbjct 56528 -GACACGATCGCCAACCTTAAAGCAAAGATCCACGACAAGGAGGG-GTTCTCATCGGATC 56471 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||||| ||||| | | || ||| || |||| Sbjct 56470 AGCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGAAGATTACA 56411 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||| || || | ||| |||| Sbjct 56410 GCATTCAGAAGGAATCCACTCTTCACCTGGT 56380 >seq1710 Length=60682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || ||||| || ||| | || ||||| ||||| ||| |||| || | ||| | Sbjct 22712 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAAAGCTCG 22771 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || || || || || || ||| | || ||| || Sbjct 22772 -GACACGATCGACAACGTTAAGGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCA 22830 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| ||||| || |||| | || |||| |||||||| Sbjct 22831 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACGTTGGCCGACTACAA 22890 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| | ||| Sbjct 22891 CATTCAGAAGGAGTCTACCCTCCACCTCGTG 22921 >seq299 Length=319228 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||||||| | || || || ||||| ||| | || || | Sbjct 261035 ATGCAGATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 261094 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || ||||| || || |||||| | ||| ||||||| Sbjct 261095 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 261154 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | || || |||||||| ||||| | | || |||| |||||||| Sbjct 261155 CAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAT 261214 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 261215 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 261244 >seq1530 Length=69702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || ||| | || ||||| ||||| ||| | || || || Sbjct 25180 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTC 25121 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | || ||| || ||| || ||||| || | ||| | ||||| Sbjct 25120 CGATACTATTGATAATGTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGATCA 25061 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || ||||| | ||||| | || | ||||||||||| Sbjct 25060 GCAAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTACAA 25001 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 25000 CATCCAGAAGGAGTCCACCCTCCACCTGGTG 24970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398738665847935