Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1530 105 1e-17 >seq1530 Length=69702 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| |||||||| || | || || || || || || |||| || ||| | | Sbjct 25406 TGCAAATTTTCATAAAGACTCTCACCGGCAAGACTATCACCCTTGAGGTCGAATCTTCTG 25347 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| ||||| ||| ||||| |||||||| || || || | Sbjct 25346 ACACCATTGATAATGTAAAGGCCAAAATTCAAGACAAAGAGGGCATTCCCCCAGACCAGC 25287 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| || ||||||||||| ||| | | || || |||| || |||| Sbjct 25286 AAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAATA 25227 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || | ||||| || Sbjct 25226 TTCAGAAGGAATCTACCCTTCATTTGGT 25199 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || || || || || |||| || ||| | | Sbjct 26318 TGCAAATTTTCGTTAAAACTCTCACCGGTAAGACCATCACCCTTGAGGTCGAATCTTCTG 26259 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| || || ||| ||||| |||||||| || || || | Sbjct 26258 ACACCATTGATAATGTAAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCAGC 26199 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| || ||||||||||| ||| | | || || |||| || |||| Sbjct 26198 AAAGGTTGATATTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCAGACTACAATA 26139 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||| || | ||||| || | | || || ||||| Sbjct 26138 TTCAGAAGGAATCTACCCTTCATTTGGTGCTCAGGTTGAGGGGAGG 26093 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || || || || || |||| || ||| | || Sbjct 25178 TGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCG 25119 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| |||||| ||| ||||| || ||||| | ||||| | Sbjct 25118 ATACTATTGATAATGTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGATCAGC 25059 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || ||||| || ||||||||||| ||| | | || || | || || || | Sbjct 25058 AAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTACAACA 24999 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || || |||| Sbjct 24998 TCCAGAAGGAGTCCACCCTCCA 24977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785887163521800