Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq403 96.9 2e-15 seq1066 91.5 1e-13 seq1190 82.4 5e-11 seq274 82.4 5e-11 >seq403 Length=254866 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || ||||| || |||| ||| ||||| |||| || Sbjct 86280 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTC 86221 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 86220 CAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 86161 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | ||||| || ||||| |||| |||||||| | Sbjct 86160 GATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCT 86102 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| || || |||||||||||| Sbjct 86101 TCCCCGTCAACGTCTTCACGAAGATCTGCATA 86070 >seq1066 Length=105919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| || || | || || | || Sbjct 79647 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 79588 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||||||| |||| | || || ||||| ||| || Sbjct 79587 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 79528 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | ||| | ||||| |||||||| || | |||||||| || || || Sbjct 79527 GCCTTC-ACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGT 79469 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || ||||||||||| Sbjct 79468 CAGCGTCTTCACGAAGATCTGCAT 79445 >seq1190 Length=94153 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | || || || | || || | ||| Sbjct 39538 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTCCGGCCATCCTCAAGTTGC 39479 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| |||| | ||||| ||| | || | || || ||||| || || Sbjct 39478 TTACCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGGATCTTA 39419 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | |||||| ||||| || |||| ||||| || || || || Sbjct 39418 GCCTTC-ACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTCTTGCCAGT 39360 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| |||||||||||||| Sbjct 39359 GAGAGTTTTAACAAAGATCTGCAT 39336 >seq274 Length=340361 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 197025 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 196966 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||||||||||| || || | ||||| ||||| || || Sbjct 196965 TTCCCGGCGAAGATGAGCCGCTGCTGATCCTGAGGAATCCCTTCCTTGTCCTGGATCTT- 196907 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || || | ||| | |||||| ||| ||||| || | || ||||| || || || Sbjct 196906 GGCTTTGACGTTGTCGATGGTGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGGT 196847 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | | || || ||||||||||| Sbjct 196846 GAGGTTCTTCACGAAGATCTGCAT 196823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328590167236800