Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1475 122 1e-22 seq262 116 5e-21 seq1439 96.9 5e-15 seq125 91.5 2e-13 seq83 87.8 2e-12 >seq1475 Length=72375 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || || ||||| |||| |||||| Sbjct 28487 TCCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACC 28428 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| |||||||| ||| |||| || || || || ||| Sbjct 28427 ATTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGA 28368 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || |||| |||||| || | || |||||||| Sbjct 28367 AACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATAT 28308 Query 69930 ACCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAACAGCTA 69972 ||||| |||||||| ||| ||||| || ||| ||||||||| Sbjct 28307 CCCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 28265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || |||||||| |||||| |||| | | ||| ||| |||||| || || | ||||||| Sbjct 29783 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 29724 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || ||| | || ||||| || |||||| ||||| ||||||||||| || ||| Sbjct 29723 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 29664 Query 69637 AGATCTCTGGTTCTATTTTCTTC 69659 || || || | ||||| ||||| Sbjct 29663 AGGTCCCTAGCTCTATGCTCTTC 29641 >seq262 Length=346991 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||| | ||| | || || ||||| |||| ||||||| Sbjct 236563 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACCA 236622 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| |||||||||||| |||| || || || || ||| Sbjct 236623 TTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGAA 236682 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || || |||| |||||| |||| || |||||||| Sbjct 236683 ACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATATT 236742 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||| ||| ||||| Sbjct 236743 CCCTCAATGCTATCTTCTTTCATG 236766 >seq1439 Length=74689 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| ||||| ||||| Sbjct 62493 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAG 62552 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 62553 ACCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCGGAGAAGA 62611 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || ||||| || | ||| Sbjct 62612 AGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 62648 >seq125 Length=520858 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| ||||| |||||||| || | || | ||||| || || ||||| Sbjct 302537 GCAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAG 302596 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| || || ||| || || ||||| |||| Sbjct 302597 CCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGC-GCAGAAGGAGCCAGAGAAGA 302655 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||| || || || || || || |||| || ||| Sbjct 302656 AGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 302692 >seq83 Length=609517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | |||||| || || ||||| Sbjct 416678 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAG 416619 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || || || |||||||| || || || ||| ||| | || || |||| Sbjct 416618 GCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGC-GCAGAAGGAGCCGGAGAAGA 416560 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 ||||||| || || || || ||||| || | ||| Sbjct 416559 AGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 416523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686664818580600