Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq202 105 5e-18 seq125 87.8 1e-12 >seq202 Length=395113 Score = 105 bits (116), Expect = 5e-18 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || ||||| || || || || || || || |||||| ||||| | Sbjct 244381 TTCTACGGTTTCCAGATTGCAATCGAGAACATCCACTCCGAGATGTACTCCCTTCTACTC 244322 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 |||||||||||||| || || ||||| ||| | || | || || || | || Sbjct 244321 GATACGTACATCAAGGACCCCGACCAGAAGTTTCGCCTCTTCCACGCCATCGACAACGTC 244262 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || ||| | | || || ||||||||||| ||||||| | || || || || Sbjct 244261 CCCGCGGTCGCCCGGAAGGCCGACTGGGCCCTCCAATGGATTGAGTCTTCTGGCTCCTTC 244202 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGC 44181 | || ||||| ||||| || || || || ||||| || || || || || || ||| Sbjct 244201 GCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGC 244142 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 ||||| || ||| | ||||| || || | ||||| || | || || || || ||| | Sbjct 244141 -GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCT 244083 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||| || ||| | || ||||| ||||||||| Sbjct 244082 CATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGCTTGC 244043 >seq125 Length=520858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 225/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || ||||| || || || || || || |||||| || || | Sbjct 302875 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTACTCCCTCCTCCTG 302816 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || |||||||| || |||||||| || | || ||| || || || || Sbjct 302815 GACACCTACATCAAGGACCCTGACGAGAAGACCCGTCTCTTCCGTGCCATCGACACGGTC 302756 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || | | | || || ||||||||||| ||||| | || | || ||| Sbjct 302755 CCCTCTGTCTCCCGAAAGGCCGACTGGGCCCTGCGCTGGATTGAATCTTCCGGCTCGTTT 302696 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGC 44181 | || ||| ||||||| || || ||| || || || ||||| || || || || ||| Sbjct 302695 GCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCCTTCTGC 302636 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || || |||||| | ||||| || || | ||||| ||| | || || || || ||| | Sbjct 302635 -GCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCT 302577 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||| || ||| | |||||||| || |||||| Sbjct 302576 TATCTCCCGTGACGAGGGCCTTCATTGCGACTTCGCTTGC 302537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397318357882075